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Title :   DIMERIC STRUCTURE OF A POST-HYDROLYSIS STATE OF THE ATP-BINDING CASSETTE MJ0796 BOUND TO ADP AND PI

Authors :   R. B. Sutton

Date :   20 Aug 11 (Deposition) - 21 Mar 12 (Release) - 21 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Nucleotide-Binding Domain, Abc Transporter Atpase, Atp Binding, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. E. Zoghbi, K. L. Fuson, R. B. Sutton, G. A. Altenberg
Kinetics Of The Association/Dissociation Cycle Of An Atp-Binding Cassette Nucleotide-Binding Domain.
J. Biol. Chem. V. 287 4157 2012
PubMed-ID: 22158619 | Reference-DOI: 10.1074/JBC.M111.318378

Molecule 1 - UNCHARACTERIZED ABC TRANSPORTER ATP-BINDING PROTEIN MJ0796
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET19B
	Expression System Strain	:	BL21(DE3)-RIPL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	MJ0796
	Mutation	:	YES
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII DSM 2661
	Organism Taxid	:	243232
	Strain	:	ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	IPA	3	Ligand/Ion	ISOPROPYL ALCOHOL
3	NA	2	Ligand/Ion	SODIUM ION
4	PI	2	Ligand/Ion	HYDROGENPHOSPHATE ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	IPA	3	Ligand/Ion	ISOPROPYL ALCOHOL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PI	-1	Ligand/Ion	HYDROGENPHOSPHATE ION

Biological Unit 2 (2, 10)

No.	Name	Count	Type	Full Name
1	ADP	4	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	IPA	6	Ligand/Ion	ISOPROPYL ALCOHOL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PI	-1	Ligand/Ion	HYDROGENPHOSPHATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:145 , SER A:147 , GLN A:150 , HOH A:313 , IPA A:1602 , HOH B:7 , HOH B:70 , HOH B:165 , TYR B:1011 , MET B:1013 , ALA B:1020 , GLY B:1041 , SER B:1042 , GLY B:1043 , LYS B:1044 , SER B:1045 , THR B:1046 , PI B:1236 , NA B:1237	BINDING SITE FOR RESIDUE ADP B 1
2	AC2	SOFTWARE	SER A:147 , GLY A:149 , ALA A:175 , ADP B:1 , SER B:1040 , LYS B:1044 , GLN B:1090 , GLN B:1171 , HIS B:1204 , NA B:1237	BINDING SITE FOR RESIDUE PI B 1236
3	AC3	SOFTWARE	TYR A:11 , ALA A:20 , GLY A:41 , SER A:42 , GLY A:43 , LYS A:44 , SER A:45 , THR A:46 , PI A:237 , NA A:238 , HOH A:281 , HOH A:333 , HOH B:179 , PHE B:1138 , GLN B:1145 , SER B:1147 , GLN B:1150	BINDING SITE FOR RESIDUE ADP A 236
4	AC4	SOFTWARE	SER A:40 , LYS A:44 , GLN A:90 , GLN A:171 , HIS A:204 , ADP A:236 , NA A:238 , SER B:1147 , GLY B:1148 , GLY B:1149 , ALA B:1175	BINDING SITE FOR RESIDUE PI A 237
5	AC5	SOFTWARE	SER A:178 , GLY A:181 , GLU A:182 , ASP A:205 , ASN A:207 , HOH A:277	BINDING SITE FOR RESIDUE IPA A 1600
6	AC6	SOFTWARE	SER B:1178 , GLY B:1181 , GLU B:1182 , ASP B:1205	BINDING SITE FOR RESIDUE IPA B 1601
7	AC7	SOFTWARE	ASN A:144 , LEU A:146 , ADP B:1	BINDING SITE FOR RESIDUE IPA A 1602
8	AC8	SOFTWARE	ADP B:1 , HOH B:7 , HOH B:76 , SER B:1045 , GLN B:1090 , PI B:1236	BINDING SITE FOR RESIDUE NA B 1237
9	AC9	SOFTWARE	SER A:45 , GLN A:90 , ASP A:170 , GLN A:171 , ADP A:236 , PI A:237	BINDING SITE FOR RESIDUE NA A 238

(no "SS Bond" information available for 3TIF)

(no "Cis Peptide Bond" information available for 3TIF)

(no "SAP(SNP)/Variant" information available for 3TIF)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	Y796_METJA	146-160	2	A:146-160 B:1146-1160

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	Y796_METJA	146-160	2	A:146-160 B:1146-1160

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	Y796_METJA	146-160	4	A:146-160 B:1146-1160

(no "Exon" information available for 3TIF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:230
 aligned with Y796_METJA | Q58206 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
          Y796_METJA      1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR  230
               SCOP domains d3tifa_ A: automated matches                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee....hhhhhhhhhhhheeee..........hhhhhhhhhhhh......hhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhh...eeeeee..eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER---------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3tif A    1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR  230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain B from PDB  Type:PROTEIN  Length:232
 aligned with Y796_METJA | Q58206 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230  
          Y796_METJA      1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF  232
               SCOP domains d3tifb_ B: automated matches                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee....hhhhhhhhhhhheeee..........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhh...eeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3tif B 1001 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 1232
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Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3TIF)

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Asymmetric Unit(hide GO term definitions)

Chain A,B (Y796_METJA | Q58206)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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	Y796_METJA \| Q58206	:	1f3o 1l2t

1l2t	ATP-BOUND DIMER OF THE MJ0796 NUCLEOTIDE-BINDING DOMAIN PROTEIN WITH A MUTATION OF A RESIDUE ESSENTIAL FOR ATP HYDROLYSIS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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