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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SUPERANTIGEN SPE-H (ZINC BOUND) FROM STREPTOCOCCUS PYOGENES
 
Authors :  V. L. Arcus, T. Proft, J. A. Sigrell, H. M. Baker, J. D. Fraser, E. N. Baker
Date :  13 Apr 00  (Deposition) - 26 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Grasp, Ob Fold, Superantigen Fold, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. L. Arcus, T. Proft, J. A. Sigrell, H. M. Baker, J. D. Fraser, E. N. Baker
Conservation And Variation In Superantigen Structure And Activity Highlighted By The Three-Dimensional Structures Of Two New Superantigens From Streptococcus Pyogenes.
J. Mol. Biol. V. 299 157 2000
PubMed-ID: 10860729  |  Reference-DOI: 10.1006/JMBI.2000.3725
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUPERANTIGEN SPE-H
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-2T
    Expression System Taxid: 562
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 1314

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:160 , HIS A:198 , ASP A:200 , HOH A:431BINDING SITE FOR RESIDUE ZN A 400
2AC2SOFTWAREHIS A:9 , ASP A:160 , HOH A:416BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:77 -A:79

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EU4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EU4)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.SPEH_STRPY154-177  1A:122-145

(-) Exons   (0, 0)

(no "Exon" information available for 1EU4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
 aligned with SPEH_STRPY | P0C0I6 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:204
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           SPEH_STRPY    33 NSYNTTNRHNLESLYKHDSNLIEADSIKNSPDIVTSHMLKYSVKDKNLSVFFEKDWISQEFKDKEVDIYALSAQEVCECPGKRYEAFGGITLTNSEKKEIKVPVNVWDKSKQQPPMFITVNKPKVTAQEVDIKVRKLLIKKYDIYNNREQKYSKGTVTLDLNSGKDIVFDLYYFGNGDFNSMLKIYSNNERIDSTQFHVDVSIS 236
               SCOP domains d1eu4a1 A:1-95 Streptococcal superantigen Spe-H                                                d1eu4a2 A:96-204 Streptococcal superantigen Spe-H                                                             SCOP domains
               CATH domains 1eu4A02 A:1-92  [code=2.40.50.110, no name defined]                                         1eu4A01 A:93-204  [code=3.10.20.120, no name defined]                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...eeeeeeee.........eeeeee..eeeeee...hhhhhh....eeeeeee.ee........eeeee..eee.......eeeeeeeee..ee...eeeee...eeehhhhhhhhhhhhhhhhh..........eeeeeeee....eeeee.......hhhhhhhhhh...eee...eeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     ----------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1eu4 A   1 NSYNTTNRHNLESLYKHDSNLIEADSIKNSPDIVTSHMLKYSVKDKNLSVFFEKDWISQEFKDKEVDIYALSAQEVCECPGKRYEAFGGITLTNSEKKEIKVPVNVWDKSKQQPPMFITVNKPKVTAQEVDIKVRKLLIKKYDIYNNREQKYSKGTVTLDLNSGKDIVFDLYYFGNGDFNSMLKIYSNNERIDSTQFHVDVSIS 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EU4)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SPEH_STRPY | P0C0I6)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPEH_STRPY | P0C0I6: 1et9

(-) Related Entries Specified in the PDB File

1et6 APO-SMEZ-2
1et9 APO-SPE-H
1eu3 ZN-SMEZ-2