1E4Z - JenaLib

Title :   BACTERIOPHAGE HK022 NUN-PROTEIN-NUTBOXB-RNA COMPLEX

Authors :   C. Faber, M. Schaerpf, H. Sticht, P. Roesch

Date :   12 Jul 00 (Deposition) - 12 Jul 01 (Release) - 12 Jul 01 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : A,B

Keywords :   Bacteriophage Hk022, Termination, Peptide-Rna-Complex, Peptide-Rna-Recognition, Protein/Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Faber, M. Schaerpf, H. Sticht, P. Roesch
Structural Investigation Of The Coliphage Hk022 Nun Protein In Complex With Rna: Implications For The Mechanism Of Transcription Termiination
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

*Molecule 1 - RNA (5- R(PGPCPCPCPUPGPAPAPAPAPAPGPGPGPC)-3)**
	Chains	:	A
	Engineered	:	YES
	Fragment	:	BACTERIOPHAGE LAMBDA NUTBOXB-RNA
	Other Details	:	NUTBOXB-RNA FROM THE NUTR-SEQUENCE
	Synthetic	:	YES

Molecule 2 - TRANSCRIPTION TERMINATION FACTOR NUN-PROTEIN
	Chains	:	B
	Engineered	:	YES
	Fragment	:	N-TERMINAL BINDING-DOMAIN, RESIDUES 23-43
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Theoretical Model

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Chain A from PDB  Type:RNA  Length:15
                                              
                  1e4z A  1 GCCCUGAAAAAGGGC 15
                                    10

Chain B from PDB  Type:PROTEIN  Length:21
 aligned with VNUN_BPHK0 | P18683 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:21
                                    35        45 
            VNUN_BPHK0   26 TSRDRRRIARWEKRIAYALKN 46
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  1e4z B 23 TSRDRRRIARWEKRIAYALKN 43
                                    32        42

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Theoretical Model(hide GO term definitions)

Chain B (VNUN_BPHK0 | P18683)


GO:0006353	DNA-templated transcription, termination	The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

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