1DX5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE THROMBIN-THROMBOMODULIN COMPLEX

Authors :   P. Fuentes-Prior, Y. Iwanaga, R. Huber, R. Pagila, G. Rumennik, M. Seto J. Morser, D. R. Light, W. Bode

Date :   20 Dec 99 (Deposition) - 10 Apr 00 (Release) - 21 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,E,I,M  (1x)
Biol. Unit 2: B,F,J,N  (1x)
Biol. Unit 3: C,G,K,O  (1x)
Biol. Unit 4: D,H,L,P  (1x)

Keywords :   Serine Proteinase, Egf-Like Domains, Anticoagulant Complex, Antifibrinolytic Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Fuentes-Prior, Y. Iwanaga, R. Huber, R. Pagila, G. Rumennik, M. Seto, J. Morser, D. R. Light, W. Bode
Structural Basis For The Anticoagulant Activity Of The Thrombin-Thrombomodulin Complex
Nature V. 404 518 2000
PubMed-ID: 10761923 | Reference-DOI: 10.1038/35006683

Molecule 1 - THROMBIN LIGHT CHAIN
	Chains	:	A, B, C, D
	EC Number	:	3.4.21.5
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	PURIFIED FROM FROZEN PLASMA
	Secretion	:	BLOOD PLASMA
	Synonym	:	COAGULATION FACTOR II

Molecule 2 - THROMBIN INHIBITOR GLU-GLY-ARG-0QE
	Chains	:	E, F, G, H
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Synonym	:	EGR-CMK
	Synthetic	:	YES

Molecule 3 - THROMBOMODULIN
	Chains	:	I, J, K, L
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Common	:	CHINESE HAMSTER
	Expression System Taxid	:	10029
	Fragment	:	EGF-LIKE DOMAINS 4 - 6
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	ENZYMATICALLY DEGLYCOSYLATED (PNGASE F)
	Synonym	:	FETOMODULIN, TM, CD141 ANTIGEN
	Tissue	:	ENDOTHELIUM

Molecule 4 - THROMBIN HEAVY CHAIN
	Chains	:	M, N, O, P
	EC Number	:	3.4.21.5
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	PURIFIED FROM FROZEN PLASMA
	Secretion	:	BLOOD PLASMA
	Synonym	:	COAGULATION FACTOR II

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P
Biological Unit 1 (1x)	:	A				E				I				M
Biological Unit 2 (1x)	:		B				F				J				N
Biological Unit 3 (1x)	:			C				G				K				O
Biological Unit 4 (1x)	:				D				H				L				P

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 29)

No.	Name	Count	Type	Full Name
1	0QE	4	Mod. Amino Acid	CHLOROMETHANE
2	AR7	4	Mod. Amino Acid	AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
3	CA	4	Ligand/Ion	CALCIUM ION
4	FMT	5	Ligand/Ion	FORMIC ACID
5	NA	8	Ligand/Ion	SODIUM ION
6	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	0QE	1	Mod. Amino Acid	CHLOROMETHANE
2	AR7	1	Mod. Amino Acid	AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
3	CA	-1	Ligand/Ion	CALCIUM ION
4	FMT	1	Ligand/Ion	FORMIC ACID
5	NA	-1	Ligand/Ion	SODIUM ION
6	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (4, 4)

No.	Name	Count	Type	Full Name
1	0QE	1	Mod. Amino Acid	CHLOROMETHANE
2	AR7	1	Mod. Amino Acid	AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
3	CA	-1	Ligand/Ion	CALCIUM ION
4	FMT	1	Ligand/Ion	FORMIC ACID
5	NA	-1	Ligand/Ion	SODIUM ION
6	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 3 (4, 4)

No.	Name	Count	Type	Full Name
1	0QE	1	Mod. Amino Acid	CHLOROMETHANE
2	AR7	1	Mod. Amino Acid	AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
3	CA	-1	Ligand/Ion	CALCIUM ION
4	FMT	1	Ligand/Ion	FORMIC ACID
5	NA	-1	Ligand/Ion	SODIUM ION
6	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 4 (4, 5)

No.	Name	Count	Type	Full Name
1	0QE	1	Mod. Amino Acid	CHLOROMETHANE
2	AR7	1	Mod. Amino Acid	AMINO{[(4S)-4-AMINO-5,5-DIHYDROXYPENTYL]AMINO}METHANIMINIUM
3	CA	-1	Ligand/Ion	CALCIUM ION
4	FMT	2	Ligand/Ion	FORMIC ACID
5	NA	-1	Ligand/Ion	SODIUM ION
6	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY H:2 , TYR P:60A	BINDING SITE FOR RESIDUE FMT H 502
02	AC2	SOFTWARE	GLU I:357 , NA I:2002	BINDING SITE FOR RESIDUE FMT I 501
03	AC3	SOFTWARE	ASP I:423 , ILE I:424 , GLU I:426 , ASN I:439 , LEU I:440 , THR I:443 , HOH I:2056	BINDING SITE FOR RESIDUE CA I1001
04	AC4	SOFTWARE	TYR I:358 , CYS I:372 , ALA I:373 , CYS I:386 , FMT I:501	BINDING SITE FOR RESIDUE NA I2002
05	AC5	SOFTWARE	GLU J:357 , NA J:2002	BINDING SITE FOR RESIDUE FMT J 501
06	AC6	SOFTWARE	ASP J:423 , ILE J:424 , GLU J:426 , ASN J:439 , LEU J:440 , THR J:443 , HOH J:2059	BINDING SITE FOR RESIDUE CA J1001
07	AC7	SOFTWARE	TYR J:358 , CYS J:372 , ALA J:373 , PHE J:376 , FMT J:501	BINDING SITE FOR RESIDUE NA J2002
08	AC8	SOFTWARE	GLU K:357 , NA K:2002	BINDING SITE FOR RESIDUE FMT K 501
09	AC9	SOFTWARE	ASP K:423 , ILE K:424 , GLU K:426 , ASN K:439 , LEU K:440 , THR K:443 , HOH K:2053	BINDING SITE FOR RESIDUE CA K1001
10	BC1	SOFTWARE	TYR K:358 , CYS K:372 , ALA K:373 , CYS K:386 , FMT K:501	BINDING SITE FOR RESIDUE NA K2002
11	BC2	SOFTWARE	GLU L:357 , NA L:2002	BINDING SITE FOR RESIDUE FMT L 501
12	BC3	SOFTWARE	ASP L:423 , ILE L:424 , GLU L:426 , ASN L:439 , LEU L:440 , THR L:443 , HOH L:2051	BINDING SITE FOR RESIDUE CA L1001
13	BC4	SOFTWARE	TYR L:358 , CYS L:372 , ALA L:373 , PHE L:376 , FMT L:501	BINDING SITE FOR RESIDUE NA L2002
14	BC5	SOFTWARE	ASP M:221 , ARG M:221A , HOH M:2109	BINDING SITE FOR RESIDUE NA M2001
15	BC6	SOFTWARE	ARG N:221A , LYS N:224 , HOH N:2094 , HOH N:2095 , HOH N:2116	BINDING SITE FOR RESIDUE NA N2001
16	BC7	SOFTWARE	ARG O:221A , LYS O:224 , HOH O:2087 , HOH O:2109 , HOH O:2112 , HOH O:2113	BINDING SITE FOR RESIDUE NA O2001
17	BC8	SOFTWARE	ARG P:221A , LYS P:224 , HOH P:2089 , HOH P:2090 , HOH P:2115	BINDING SITE FOR RESIDUE NA P2001
18	BC9	SOFTWARE	LEU M:60 , ASN M:60G , ILE M:60I	BINDING SITE FOR MONO-SACCHARIDE NAG M 600 BOUND TO ASN M 60G
19	CC1	SOFTWARE	LEU N:60 , ASN N:60G , ILE N:60I	BINDING SITE FOR MONO-SACCHARIDE NAG N 600 BOUND TO ASN N 60G
20	CC2	SOFTWARE	ASN O:60G , ILE O:60I	BINDING SITE FOR MONO-SACCHARIDE NAG O 600 BOUND TO ASN O 60G
21	CC3	SOFTWARE	LEU P:60 , ASN P:60G , ILE P:60I , HOH P:2053	BINDING SITE FOR MONO-SACCHARIDE NAG P 600 BOUND TO ASN P 60G

Asymmetric Unit

No.	Residues
1	A:1	-	M:122
2	B:1	-	N:122
3	C:1	-	O:122
4	D:1	-	P:122
5	I:351	-	I:360
6	I:356	-	I:370
7	I:372	-	I:386
8	I:390	-	I:395
9	I:399	-	I:407
10	I:409	-	I:421
11	I:427	-	I:437
12	I:433	-	I:446
13	I:448	-	I:462
14	J:351	-	J:360
15	J:356	-	J:370
16	J:372	-	J:386
17	J:390	-	J:395
18	J:399	-	J:407
19	J:409	-	J:421
20	J:427	-	J:437
21	J:433	-	J:446
22	J:448	-	J:462
23	K:351	-	K:360
24	K:356	-	K:370
25	K:372	-	K:386
26	K:390	-	K:395
27	K:399	-	K:407
28	K:409	-	K:421
29	K:427	-	K:437
30	K:433	-	K:446
31	K:448	-	K:462
32	L:351	-	L:360
33	L:356	-	L:370
34	L:372	-	L:386
35	L:390	-	L:395
36	L:399	-	L:407
37	L:409	-	L:421
38	L:427	-	L:437
39	L:433	-	L:446
40	L:448	-	L:462
41	M:42	-	M:58
42	M:168	-	M:182
43	M:191	-	M:220
44	N:42	-	N:58
45	N:168	-	N:182
46	N:191	-	N:220
47	O:42	-	O:58
48	O:168	-	O:182
49	O:191	-	O:220
50	P:42	-	P:58
51	P:168	-	P:182
52	P:191	-	P:220

Asymmetric Unit

No.	Residues
1	Glu I:346	-	Pro I:347
2	Gly I:449	-	Pro I:450
3	Gly J:449	-	Pro J:450
4	Gly L:449	-	Pro L:450
5	Ser M:36A	-	Pro M:37
6	Ser N:36A	-	Pro N:37
7	Ser O:36A	-	Pro O:37
8	Ser P:36A	-	Pro P:37

Asymmetric Unit (9, 36)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_006714	M	380	T	THRB_HUMAN	Disease (FA2D)	121918481	M/N/O/P	M	32	T
2	UniProt	VAR_011782	P	386	T	THRB_HUMAN	Polymorphism	5897	M/N/O/P	P	37	T
3	UniProt	VAR_006715	R	425	C	THRB_HUMAN	Disease (FA2D)	121918479	M/N/O/P	R	67	C
4	UniProt	VAR_006716	R	431	H	THRB_HUMAN	Disease (FA2D)	121918482	M/N/O/P	R	73	H
5	UniProt	VAR_006717	R	461	W	THRB_HUMAN	Disease (FA2D)	121918478	M/N/O/P	R	101	W
6	UniProt	VAR_006718	E	509	A	THRB_HUMAN	Disease (FA2D)	---	M/N/O/P	E	146	A
7	UniProt	VAR_068913	E	532	Q	THRB_HUMAN	Polymorphism	---	M/N/O/P	E	164	Q
8	UniProt	VAR_006719	G	601	V	THRB_HUMAN	Disease (FA2D)	121918480	M/N/O/P	G	226	V
9	UniProt	VAR_011370	A	473	V	TRBM_HUMAN	Polymorphism	1042579	I/J/K/L	A	455	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_006714	M	380	T	THRB_HUMAN	Disease (FA2D)	121918481	M	M	32	T
2	UniProt	VAR_011782	P	386	T	THRB_HUMAN	Polymorphism	5897	M	P	37	T
3	UniProt	VAR_006715	R	425	C	THRB_HUMAN	Disease (FA2D)	121918479	M	R	67	C
4	UniProt	VAR_006716	R	431	H	THRB_HUMAN	Disease (FA2D)	121918482	M	R	73	H
5	UniProt	VAR_006717	R	461	W	THRB_HUMAN	Disease (FA2D)	121918478	M	R	101	W
6	UniProt	VAR_006718	E	509	A	THRB_HUMAN	Disease (FA2D)	---	M	E	146	A
7	UniProt	VAR_068913	E	532	Q	THRB_HUMAN	Polymorphism	---	M	E	164	Q
8	UniProt	VAR_006719	G	601	V	THRB_HUMAN	Disease (FA2D)	121918480	M	G	226	V
9	UniProt	VAR_011370	A	473	V	TRBM_HUMAN	Polymorphism	1042579	I	A	455	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_006714	M	380	T	THRB_HUMAN	Disease (FA2D)	121918481	N	M	32	T
2	UniProt	VAR_011782	P	386	T	THRB_HUMAN	Polymorphism	5897	N	P	37	T
3	UniProt	VAR_006715	R	425	C	THRB_HUMAN	Disease (FA2D)	121918479	N	R	67	C
4	UniProt	VAR_006716	R	431	H	THRB_HUMAN	Disease (FA2D)	121918482	N	R	73	H
5	UniProt	VAR_006717	R	461	W	THRB_HUMAN	Disease (FA2D)	121918478	N	R	101	W
6	UniProt	VAR_006718	E	509	A	THRB_HUMAN	Disease (FA2D)	---	N	E	146	A
7	UniProt	VAR_068913	E	532	Q	THRB_HUMAN	Polymorphism	---	N	E	164	Q
8	UniProt	VAR_006719	G	601	V	THRB_HUMAN	Disease (FA2D)	121918480	N	G	226	V
9	UniProt	VAR_011370	A	473	V	TRBM_HUMAN	Polymorphism	1042579	J	A	455	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_006714	M	380	T	THRB_HUMAN	Disease (FA2D)	121918481	O	M	32	T
2	UniProt	VAR_011782	P	386	T	THRB_HUMAN	Polymorphism	5897	O	P	37	T
3	UniProt	VAR_006715	R	425	C	THRB_HUMAN	Disease (FA2D)	121918479	O	R	67	C
4	UniProt	VAR_006716	R	431	H	THRB_HUMAN	Disease (FA2D)	121918482	O	R	73	H
5	UniProt	VAR_006717	R	461	W	THRB_HUMAN	Disease (FA2D)	121918478	O	R	101	W
6	UniProt	VAR_006718	E	509	A	THRB_HUMAN	Disease (FA2D)	---	O	E	146	A
7	UniProt	VAR_068913	E	532	Q	THRB_HUMAN	Polymorphism	---	O	E	164	Q
8	UniProt	VAR_006719	G	601	V	THRB_HUMAN	Disease (FA2D)	121918480	O	G	226	V
9	UniProt	VAR_011370	A	473	V	TRBM_HUMAN	Polymorphism	1042579	K	A	455	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (9, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_006714	M	380	T	THRB_HUMAN	Disease (FA2D)	121918481	P	M	32	T
2	UniProt	VAR_011782	P	386	T	THRB_HUMAN	Polymorphism	5897	P	P	37	T
3	UniProt	VAR_006715	R	425	C	THRB_HUMAN	Disease (FA2D)	121918479	P	R	67	C
4	UniProt	VAR_006716	R	431	H	THRB_HUMAN	Disease (FA2D)	121918482	P	R	73	H
5	UniProt	VAR_006717	R	461	W	THRB_HUMAN	Disease (FA2D)	121918478	P	R	101	W
6	UniProt	VAR_006718	E	509	A	THRB_HUMAN	Disease (FA2D)	---	P	E	146	A
7	UniProt	VAR_068913	E	532	Q	THRB_HUMAN	Polymorphism	---	P	E	164	Q
8	UniProt	VAR_006719	G	601	V	THRB_HUMAN	Disease (FA2D)	121918480	P	G	226	V
9	UniProt	VAR_011370	A	473	V	TRBM_HUMAN	Polymorphism	1042579	L	A	455	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (7, 32)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TRBM_HUMAN	284-324 325-361 365-405 441-481	8	- - I:347-387 J:347-387 K:347-387 L:347-387 I:423-462 J:423-462 K:423-462 L:423-462
2	EGF_2	PS01186	EGF-like domain signature 2.	TRBM_HUMAN	308-323 425-439	4	- I:407-421 J:407-421 K:407-421 L:407-421
3	EGF_CA	PS01187	Calcium-binding EGF-like domain signature.	TRBM_HUMAN	325-349 441-464	4	- I:423-446 J:423-446 K:423-446 L:423-446
4	ASX_HYDROXYL	PS00010	Aspartic acid and asparagine hydroxylation site.	TRBM_HUMAN	340-351 455-466	4	- I:437-448 J:437-448 K:437-448 L:437-448
5	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	THRB_HUMAN	364-618	4	M:16-243 N:16-243 O:16-243 P:16-243
6	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	THRB_HUMAN	402-407	4	M:53-58 N:53-58 O:53-58 P:53-58
7	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	THRB_HUMAN	562-573	4	M:189-200 N:189-200 O:189-200 P:189-200

Biological Unit 1 (7, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TRBM_HUMAN	284-324 325-361 365-405 441-481	2	- - I:347-387 - - - I:423-462 - - -
2	EGF_2	PS01186	EGF-like domain signature 2.	TRBM_HUMAN	308-323 425-439	1	- I:407-421 - - -
3	EGF_CA	PS01187	Calcium-binding EGF-like domain signature.	TRBM_HUMAN	325-349 441-464	1	- I:423-446 - - -
4	ASX_HYDROXYL	PS00010	Aspartic acid and asparagine hydroxylation site.	TRBM_HUMAN	340-351 455-466	1	- I:437-448 - - -
5	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	THRB_HUMAN	364-618	1	M:16-243 - - -
6	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	THRB_HUMAN	402-407	1	M:53-58 - - -
7	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	THRB_HUMAN	562-573	1	M:189-200 - - -

Biological Unit 2 (7, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TRBM_HUMAN	284-324 325-361 365-405 441-481	2	- - - J:347-387 - - - J:423-462 - -
2	EGF_2	PS01186	EGF-like domain signature 2.	TRBM_HUMAN	308-323 425-439	1	- - J:407-421 - -
3	EGF_CA	PS01187	Calcium-binding EGF-like domain signature.	TRBM_HUMAN	325-349 441-464	1	- - J:423-446 - -
4	ASX_HYDROXYL	PS00010	Aspartic acid and asparagine hydroxylation site.	TRBM_HUMAN	340-351 455-466	1	- - J:437-448 - -
5	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	THRB_HUMAN	364-618	1	- N:16-243 - -
6	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	THRB_HUMAN	402-407	1	- N:53-58 - -
7	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	THRB_HUMAN	562-573	1	- N:189-200 - -

Biological Unit 3 (7, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TRBM_HUMAN	284-324 325-361 365-405 441-481	2	- - - - K:347-387 - - - K:423-462 -
2	EGF_2	PS01186	EGF-like domain signature 2.	TRBM_HUMAN	308-323 425-439	1	- - - K:407-421 -
3	EGF_CA	PS01187	Calcium-binding EGF-like domain signature.	TRBM_HUMAN	325-349 441-464	1	- - - K:423-446 -
4	ASX_HYDROXYL	PS00010	Aspartic acid and asparagine hydroxylation site.	TRBM_HUMAN	340-351 455-466	1	- - - K:437-448 -
5	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	THRB_HUMAN	364-618	1	- - O:16-243 -
6	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	THRB_HUMAN	402-407	1	- - O:53-58 -
7	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	THRB_HUMAN	562-573	1	- - O:189-200 -

Biological Unit 4 (7, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TRBM_HUMAN	284-324 325-361 365-405 441-481	2	- - - - - L:347-387 - - - L:423-462
2	EGF_2	PS01186	EGF-like domain signature 2.	TRBM_HUMAN	308-323 425-439	1	- - - - L:407-421
3	EGF_CA	PS01187	Calcium-binding EGF-like domain signature.	TRBM_HUMAN	325-349 441-464	1	- - - - L:423-446
4	ASX_HYDROXYL	PS00010	Aspartic acid and asparagine hydroxylation site.	TRBM_HUMAN	340-351 455-466	1	- - - - L:437-448
5	TRYPSIN_DOM	PS50240	Serine proteases, trypsin domain profile.	THRB_HUMAN	364-618	1	- - - P:16-243
6	TRYPSIN_HIS	PS00134	Serine proteases, trypsin family, histidine active site.	THRB_HUMAN	402-407	1	- - - P:53-58
7	TRYPSIN_SER	PS00135	Serine proteases, trypsin family, serine active site.	THRB_HUMAN	562-573	1	- - - P:189-200

Asymmetric Unit (8, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000311907	1a	ENSE00001931088	chr11:46740730-46740864	135	THRB_HUMAN	1-27	27	0	-	-
1.2a	ENST00000311907	2a	ENSE00001181543	chr11:46741252-46741412	161	THRB_HUMAN	27-80	54	0	-	-
1.3	ENST00000311907	3	ENSE00001181538	chr11:46742073-46742097	25	THRB_HUMAN	81-89	9	0	-	-
1.4	ENST00000311907	4	ENSE00001181532	chr11:46742340-46742390	51	THRB_HUMAN	89-106	18	0	-	-
1.6a	ENST00000311907	6a	ENSE00001181527	chr11:46744730-46744835	106	THRB_HUMAN	106-141	36	0	-	-
1.6c	ENST00000311907	6c	ENSE00001181524	chr11:46744932-46745068	137	THRB_HUMAN	141-187	47	0	-	-
1.7b	ENST00000311907	7b	ENSE00001688723	chr11:46747409-46747723	315	THRB_HUMAN	187-292	106	0	-	-
1.8	ENST00000311907	8	ENSE00002179953	chr11:46748048-46748176	129	THRB_HUMAN	292-335	44	4	A:1H-1A B:1H-1A C:1H-1A D:1H-1A - - - -	8 8 8 8 - - - -
1.9	ENST00000311907	9	ENSE00001770269	chr11:46748261-46748387	127	THRB_HUMAN	335-377	43	8	A:1A-15 B:1A-15 C:1A-15 D:1A-15 M:16-29 N:16-29 O:16-29 P:16-29	29 29 29 29 14 14 14 14
1.10	ENST00000311907	10	ENSE00001650441	chr11:46749546-46749713	168	THRB_HUMAN	377-433	57	4	- - - - M:29-75 N:29-75 O:29-75 P:29-75	- - - - 57 57 57 57
1.11b	ENST00000311907	11b	ENSE00001657931	chr11:46750214-46750387	174	THRB_HUMAN	433-491	59	4	- - - - M:75-129B N:75-129B O:75-129B P:75-129B	- - - - 59 59 59 59
1.12	ENST00000311907	12	ENSE00001646362	chr11:46750930-46751111	182	THRB_HUMAN	491-552	62	4	- - - - M:129B-184 N:129B-184 O:129B-184 P:129B-184	- - - - 62 62 62 62
1.13	ENST00000311907	13	ENSE00001680217	chr11:46760598-46760668	71	THRB_HUMAN	552-575	24	4	- - - - M:184-202 N:184-202 O:184-202 P:184-202	- - - - 24 24 24 24
1.14c	ENST00000311907	14c	ENSE00001227030	chr11:46760815-46761056	242	THRB_HUMAN	576-622	47	4	- - - - M:203-247 (gaps) N:203-247 (gaps) O:203-247 (gaps) P:203-247 (gaps)	- - - - 48 48 48 48

2.1	ENST00000377103	1	ENSE00001472793	chr20:23030378-23026270	4109	TRBM_HUMAN	1-654	654	4	I:345-462 J:345-462 K:345-462 L:345-462	118 118 118 118

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:36
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:36
                                   337       347       357      
          THRB_HUMAN    328 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR  363
               SCOP domains d1dx5.1 A:,M: Thrombin               SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhh....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------ PROSITE (4)
                PROSITE (1) ------------------------------------ PROSITE (1)
           Transcript 1 (1) Exon 1.8---------------------------- Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.9  PDB: A:1A-15        Transcript 1 (2)
                1dx5 A   1H TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR   15
                            |||||||| 2        12  |||||14H||||| 
                            ||||||||            14A||||||14J||| 
                           1H|||||||             14B||||||14K|| 
                            1G||||||              14C||||||14L| 
                             1F|||||               14D||||| 14M 
                              1E||||                14E||||     
                               1D|||                 14F|||     
                                1C||                  14G||     
                                 1B|                   14H|     
                                  1A                    14I

Chain B from PDB  Type:PROTEIN  Length:36
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:36
                                   337       347       357      
          THRB_HUMAN    328 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR  363
               SCOP domains d1dx5.2 B:,N: Thrombin               SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------ PROSITE (4)
                PROSITE (1) ------------------------------------ PROSITE (1)
           Transcript 1 (1) Exon 1.8---------------------------- Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.9  PDB: B:1A-15        Transcript 1 (2)
                1dx5 B   1H TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR   15
                            |||||||| 2        12  |||||14H||||| 
                            ||||||||            14A||||||14J||| 
                           1H|||||||             14B||||||14K|| 
                            1G||||||              14C||||||14L| 
                             1F|||||               14D||||| 14M 
                              1E||||                14E||||     
                               1D|||                 14F|||     
                                1C||                  14G||     
                                 1B|                   14H|     
                                  1A                    14I

Chain C from PDB  Type:PROTEIN  Length:36
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:36
                                   337       347       357      
          THRB_HUMAN    328 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR  363
               SCOP domains d1dx5.3 C:,O: Thrombin               SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------ PROSITE (4)
                PROSITE (1) ------------------------------------ PROSITE (1)
           Transcript 1 (1) Exon 1.8---------------------------- Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.9  PDB: C:1A-15        Transcript 1 (2)
                1dx5 C   1H TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR   15
                            |||||||| 2        12  |||||14H||||| 
                            ||||||||            14A||||||14J||| 
                           1H|||||||             14B||||||14K|| 
                            1G||||||              14C||||||14L| 
                             1F|||||               14D||||| 14M 
                              1E||||                14E||||     
                               1D|||                 14F|||     
                                1C||                  14G||     
                                 1B|                   14H|     
                                  1A                    14I

Chain D from PDB  Type:PROTEIN  Length:36
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:36
                                   337       347       357      
          THRB_HUMAN    328 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR  363
               SCOP domains d1dx5.4 D:,P: Thrombin               SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhh....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                PROSITE (2) ------------------------------------ PROSITE (2)
                PROSITE (3) ------------------------------------ PROSITE (3)
                PROSITE (4) ------------------------------------ PROSITE (4)
                PROSITE (1) ------------------------------------ PROSITE (1)
           Transcript 1 (1) Exon 1.8---------------------------- Transcript 1 (1)
           Transcript 1 (2) -------Exon 1.9  PDB: D:1A-15        Transcript 1 (2)
                1dx5 D   1H TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR   15
                            |||||||| 2        12  |||||14H||||| 
                            ||||||||            14A||||||14J||| 
                           1H|||||||             14B||||||14K|| 
                            1G||||||              14C||||||14L| 
                             1F|||||               14D||||| 14M 
                              1E||||                14E||||     
                               1D|||                 14F|||     
                                1C||                  14G||     
                                 1B|                   14H|     
                                  1A                    14I

Chain E from PDB  Type:PROTEIN  Length:4
                                     
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                1dx5 E    1 EGrx    4
                              ||
                              3-AR7
                               4-0QE

Chain F from PDB  Type:PROTEIN  Length:4
                                     
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                1dx5 F    1 EGrx    4
                              ||
                              ||
                              3-AR7
                               4-0QE

Chain G from PDB  Type:PROTEIN  Length:4
                                     
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                1dx5 G    1 EGrx    4
                              ||
                              ||
                              3-AR7
                               4-0QE

Chain H from PDB  Type:PROTEIN  Length:4
                                     
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                1dx5 H    1 EGrx    4
                              ||
                              ||
                              3-AR7
                               4-0QE

Chain I from PDB  Type:PROTEIN  Length:118
 aligned with TRBM_HUMAN | P07204 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:118
                                   372       382       392       402       412       422       432       442       452       462       472        
          TRBM_HUMAN    363 VEPVDPCFRANCEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALARHIGTDC  480
               SCOP domains d1dx5i1 I:345-387                          d1dx5i2 I:388-422                  d1dx5i3 I:423-462                        SCOP domains
               CATH domains 1dx5I01 I:345-389 Laminin                    1dx5I02 I:390-422 Laminin        1dx5I03 I:423-462 Laminin                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....eeee.....eeee....eeee..eeeeeee.....eee.ee.......ee....eeee...eeee.hhhhhh.....eeee....eeeee......eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------V------- SAPs(SNPs)
                PROSITE (1) --EGF_3  PDB: I:347-387 UniProt: 365-405   -------------------EGF_2          -EGF_3  PDB: I:423-462 UniProt: 441-481   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------EGF_CA  PDB: I:423-446  ---------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------ASX_HYDROXYL-------------- PROSITE (3)
               Transcript 2 Exon 2.1  PDB: I:345-462 UniProt: 1-654 [INCOMPLETE]                                                                   Transcript 2
                1dx5 I  345 VEPVDPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC  462
                                   354       364       374       384       394       404       414       424       434       444       454

Chain J from PDB  Type:PROTEIN  Length:118
 aligned with TRBM_HUMAN | P07204 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:118
                                   372       382       392       402       412       422       432       442       452       462       472        
          TRBM_HUMAN    363 VEPVDPCFRANCEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALARHIGTDC  480
               SCOP domains d1dx5j1 J:345-387                          d1dx5j2 J:388-422                  d1dx5j3 J:423-462                        SCOP domains
               CATH domains 1dx5J01 J:345-389 Laminin                    1dx5J02 J:390-422 Laminin        1dx5J03 J:423-462 Laminin                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....eeee.....eeee....eeee..eeeeeee.....eee.ee.......ee....eeee...eeee.hhhhhh.....eeee....eeee........eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------V------- SAPs(SNPs)
                PROSITE (1) --EGF_3  PDB: J:347-387 UniProt: 365-405   -------------------EGF_2          -EGF_3  PDB: J:423-462 UniProt: 441-481   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------EGF_CA  PDB: J:423-446  ---------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------ASX_HYDROXYL-------------- PROSITE (3)
               Transcript 2 Exon 2.1  PDB: J:345-462 UniProt: 1-654 [INCOMPLETE]                                                                   Transcript 2
                1dx5 J  345 VEPVDPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC  462
                                   354       364       374       384       394       404       414       424       434       444       454

Chain K from PDB  Type:PROTEIN  Length:118
 aligned with TRBM_HUMAN | P07204 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:118
                                   372       382       392       402       412       422       432       442       452       462       472        
          TRBM_HUMAN    363 VEPVDPCFRANCEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALARHIGTDC  480
               SCOP domains d1dx5k1 K:345-387                          d1dx5k2 K:388-422                  d1dx5k3 K:423-462                        SCOP domains
               CATH domains 1dx5K01 K:345-389 Laminin                    1dx5K02 K:390-422 Laminin        1dx5K03 K:423-462 Laminin                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....eeee.....eeee....eeee..eeeeeee.....eee.eee.....eee....eeee...eeee.hhhhhh.....eeee....eeee........eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------V------- SAPs(SNPs)
                PROSITE (1) --EGF_3  PDB: K:347-387 UniProt: 365-405   -------------------EGF_2          -EGF_3  PDB: K:423-462 UniProt: 441-481   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------EGF_CA  PDB: K:423-446  ---------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------ASX_HYDROXYL-------------- PROSITE (3)
               Transcript 2 Exon 2.1  PDB: K:345-462 UniProt: 1-654 [INCOMPLETE]                                                                   Transcript 2
                1dx5 K  345 VEPVDPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC  462
                                   354       364       374       384       394       404       414       424       434       444       454

Chain L from PDB  Type:PROTEIN  Length:118
 aligned with TRBM_HUMAN | P07204 from UniProtKB/Swiss-Prot  Length:575

    Alignment length:118
                                   372       382       392       402       412       422       432       442       452       462       472        
          TRBM_HUMAN    363 VEPVDPCFRANCEYQCQPLNQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALARHIGTDC  480
               SCOP domains d1dx5l1 L:345-387                          d1dx5l2 L:388-422                  d1dx5l3 L:423-462                        SCOP domains
               CATH domains 1dx5L01 L:345-389 Laminin                    1dx5L02 L:390-422 Laminin        1dx5L03 L:423-462 Laminin                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh....eeee.....eeee....eeee..eeeeeee.....eee.eee.....eee....eeee...eeee.hhhhhh.....eeee....eeee.........ee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------V------- SAPs(SNPs)
                PROSITE (1) --EGF_3  PDB: L:347-387 UniProt: 365-405   -------------------EGF_2          -EGF_3  PDB: L:423-462 UniProt: 441-481   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------EGF_CA  PDB: L:423-446  ---------------- PROSITE (2)
                PROSITE (3) --------------------------------------------------------------------------------------------ASX_HYDROXYL-------------- PROSITE (3)
               Transcript 2 Exon 2.1  PDB: L:345-462 UniProt: 1-654 [INCOMPLETE]                                                                   Transcript 2
                1dx5 L  345 VEPVDPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC  462
                                   354       364       374       384       394       404       414       424       434       444       454

Chain M from PDB  Type:PROTEIN  Length:259
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:259
                                   373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613         
          THRB_HUMAN    364 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  622
               SCOP domains d1dx5.1 A:,M: Thrombin                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1dx5M01     1dx5M02 M:28-120,M:233-246 Trypsin-like serine proteases                                                 1dx5M01 M:16-27,M:121-232 Trypsin-like serine proteases                                                                        1dx5M02       - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee....eeeeeeee....eeeehhhh.eehhhhee.hhh.eeeee.............eee.eeeeee..............eeeee................hhhhhhhhh....eeeeee....................eeeeee..hhhhhhhh........eeee..hhhhh............eeeee......eeeeeeeee..........eeeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------T-----T--------------------------------------C-----H-----------------------------W-----------------------------------------------A----------------------Q--------------------------------------------------------------------V--------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) TRYPSIN_DOM  PDB: M:16-243 UniProt: 364-618                                                                                                                                                                                                                    ---- PROSITE (4)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (1)
           Transcript 1 (1) -------------Exon 1.10  PDB: M:29-75 UniProt: 377-433                 ---------------------------------------------------------Exon 1.12  PDB: M:129B-184 UniProt: 491-552                   -----------------------Exon 1.14c  PDB: M:203-247 (gaps)               Transcript 1 (1)
           Transcript 1 (2) Exon 1.9      -------------------------------------------------------Exon 1.11b  PDB: M:75-129B UniProt: 433-491                ------------------------------------------------------------Exon 1.13  PDB: M:184-20----------------------------------------------- Transcript 1 (2)
                1dx5 M   16 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  247
                                    25        35 |      44        54      |60D|||||   65        75  |     84        94   |   103       113       123      |130       140      149A||||   155       165       175      184A  |||| 190       200    || 208       219  |    228       238         
                                               36A                      60A||||||||               77A                  97A                             129A||                 149A||||                                184A  ||||               204A|          217|  |                          
                                                                         60B|||||||                                                                     129B|                  149B|||                                   186A|||                204B           219  |                          
                                                                          60C||||||                                                                      129C                   149C||                                    186B||                                 221A                          
                                                                           60D|||||                                                                                              149D|                                     186C|                                                               
                                                                            60E||||                                                                                               149E                                      186D                                                               
                                                                             60F|||                                                                                                                                                                                                            
                                                                              60G||                                                                                                                                                                                                            
                                                                               60H|                                                                                                                                                                                                            
                                                                                60I

Chain N from PDB  Type:PROTEIN  Length:259
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:259
                                   373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613         
          THRB_HUMAN    364 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  622
               SCOP domains d1dx5.2 B:,N: Thrombin                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1dx5N01     1dx5N02 N:28-120,N:233-246 Trypsin-like serine proteases                                                 1dx5N01 N:16-27,N:121-232 Trypsin-like serine proteases                                                                        1dx5N02       - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee....eeeeeeee....eeeehhhh.eehhhhee.hhh.eeeee.............eee.eeeeee..............eeeee................hhhhhhhhh....eeeeee....................eeeeee..hhhhhhhh........eeee..hhhhh............eeeee......eeeeeeeee..........eeeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------T-----T--------------------------------------C-----H-----------------------------W-----------------------------------------------A----------------------Q--------------------------------------------------------------------V--------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) TRYPSIN_DOM  PDB: N:16-243 UniProt: 364-618                                                                                                                                                                                                                    ---- PROSITE (4)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (1)
           Transcript 1 (1) -------------Exon 1.10  PDB: N:29-75 UniProt: 377-433                 ---------------------------------------------------------Exon 1.12  PDB: N:129B-184 UniProt: 491-552                   -----------------------Exon 1.14c  PDB: N:203-247 (gaps)               Transcript 1 (1)
           Transcript 1 (2) Exon 1.9      -------------------------------------------------------Exon 1.11b  PDB: N:75-129B UniProt: 433-491                ------------------------------------------------------------Exon 1.13  PDB: N:184-20----------------------------------------------- Transcript 1 (2)
                1dx5 N   16 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  247
                                    25        35 |      44        54      |60D|||||   65        75  |     84        94   |   103       113       123      |130       140      149A||||   155       165       175      184A  |||| 190       200    || 208       219  |    228       238         
                                               36A                      60A||||||||               77A                  97A                             129A||                 149A||||                                184A  ||||               204A|          217|  |                          
                                                                         60B|||||||                                                                     129B|                  149B|||                                   186A|||                204B           219  |                          
                                                                          60C||||||                                                                      129C                   149C||                                    186B||                                 221A                          
                                                                           60D|||||                                                                                              149D|                                     186C|                                                               
                                                                            60E||||                                                                                               149E                                      186D                                                               
                                                                             60F|||                                                                                                                                                                                                            
                                                                              60G||                                                                                                                                                                                                            
                                                                               60H|                                                                                                                                                                                                            
                                                                                60I

Chain O from PDB  Type:PROTEIN  Length:259
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:259
                                   373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613         
          THRB_HUMAN    364 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  622
               SCOP domains d1dx5.3 C:,O: Thrombin                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1dx5O01     1dx5O02 O:28-120,O:233-246 Trypsin-like serine proteases                                                 1dx5O01 O:16-27,O:121-232 Trypsin-like serine proteases                                                                        1dx5O02       - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee....eeeeeeee....eeeehhhh.eehhhhee.hhh.eeeee.............eee.eeeeee..............eeeee................hhhhhhhhh....eeeeee....................eeeeee..hhhhhhhh........eeee..hhhhh............eeeee......eeeeeeeee..........eeeee...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------T-----T--------------------------------------C-----H-----------------------------W-----------------------------------------------A----------------------Q--------------------------------------------------------------------V--------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) TRYPSIN_DOM  PDB: O:16-243 UniProt: 364-618                                                                                                                                                                                                                    ---- PROSITE (4)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (1)
           Transcript 1 (1) -------------Exon 1.10  PDB: O:29-75 UniProt: 377-433                 ---------------------------------------------------------Exon 1.12  PDB: O:129B-184 UniProt: 491-552                   -----------------------Exon 1.14c  PDB: O:203-247 (gaps)               Transcript 1 (1)
           Transcript 1 (2) Exon 1.9      -------------------------------------------------------Exon 1.11b  PDB: O:75-129B UniProt: 433-491                ------------------------------------------------------------Exon 1.13  PDB: O:184-20----------------------------------------------- Transcript 1 (2)
                1dx5 O   16 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  247
                                    25        35 |      44        54      |60D|||||   65        75  |     84        94   |   103       113       123      |130       140      149A||||   155       165       175      184A  |||| 190       200    || 208       219  |    228       238         
                                               36A                      60A||||||||               77A                  97A                             129A||                 149A||||                                184A  ||||               204A|          217|  |                          
                                                                         60B|||||||                                                                     129B|                  149B|||                                   186A|||                204B           219  |                          
                                                                          60C||||||                                                                      129C                   149C||                                    186B||                                 221A                          
                                                                           60D|||||                                                                                              149D|                                     186C|                                                               
                                                                            60E||||                                                                                               149E                                      186D                                                               
                                                                             60F|||                                                                                                                                                                                                            
                                                                              60G||                                                                                                                                                                                                            
                                                                               60H|                                                                                                                                                                                                            
                                                                                60I

Chain P from PDB  Type:PROTEIN  Length:259
 aligned with THRB_HUMAN | P00734 from UniProtKB/Swiss-Prot  Length:622

    Alignment length:259
                                   373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613         
          THRB_HUMAN    364 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  622
               SCOP domains d1dx5.4 D:,P: Thrombin                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1dx5P01     1dx5P02 P:28-120,P:233-246 Trypsin-like serine proteases                                                 1dx5P01 P:16-27,P:121-232 Trypsin-like serine proteases                                                                        1dx5P02       - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee....eeeeeeee....eeeehhhh.eehhhhee.hhh.eeeee.............eee.eeeeee..............eeeee................hhhhhhhhh....eeeeee....................eeeeee..hhhhhhhh........eeee..hhhhh............eeeee......eeeeeeeee..........eeeeehhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------T-----T--------------------------------------C-----H-----------------------------W-----------------------------------------------A----------------------Q--------------------------------------------------------------------V--------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) TRYPSIN_DOM  PDB: P:16-243 UniProt: 364-618                                                                                                                                                                                                                    ---- PROSITE (4)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (1)
           Transcript 1 (1) -------------Exon 1.10  PDB: P:29-75 UniProt: 377-433                 ---------------------------------------------------------Exon 1.12  PDB: P:129B-184 UniProt: 491-552                   -----------------------Exon 1.14c  PDB: P:203-247 (gaps)               Transcript 1 (1)
           Transcript 1 (2) Exon 1.9      -------------------------------------------------------Exon 1.11b  PDB: P:75-129B UniProt: 433-491                ------------------------------------------------------------Exon 1.13  PDB: P:184-20----------------------------------------------- Transcript 1 (2)
                1dx5 P   16 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE  247
                                    25        35 |      44        54      |60D|||||   65        75  |     84        94   |   103       113       123      |130       140      149A||||   155       165       175      184A  |||| 190       200    || 208       219  |    228       238         
                                               36A                      60A||||||||               77A                  97A                             129A||                 149A||||                                184A  ||||               204A|          217|  |                          
                                                                         60B|||||||                                                                     129B|                  149B|||                                   186A|||                204B           219  |                          
                                                                          60C||||||                                                                      129C                   149C||                                    186B||                                 221A                          
                                                                           60D|||||                                                                                              149D|                                     186C|                                                               
                                                                            60E||||                                                                                               149E                                      186D                                                               
                                                                             60F|||                                                                                                                                                                                                            
                                                                              60G||                                                                                                                                                                                                            
                                                                               60H|                                                                                                                                                                                                            
                                                                                60I

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: Eukaryotic proteases (1343)

Protein domain: Thrombin (188)

Human (Homo sapiens) [TaxId: 9606] (169)

1a	d1dx5.1	A:,M:
1b	d1dx5.2	B:,N:
1c	d1dx5.3	C:,O:
1d	d1dx5.4	D:,P:

Class: Small proteins (3458)

Fold: Knottins (small inhibitors, toxins, lectins) (761)

Superfamily: EGF/Laminin (347)

Family: EGF-type module (304)

Protein domain: Thrombomodulin, different EGF-like domains (6)

Human (Homo sapiens) [TaxId: 9606] (6)

2a	d1dx5i1	I:345-387
2b	d1dx5i2	I:388-422
2c	d1dx5l2	L:388-422
2d	d1dx5l3	L:423-462
2e	d1dx5i3	I:423-462
2f	d1dx5j1	J:345-387
2g	d1dx5j2	J:388-422
2h	d1dx5j3	J:423-462
2i	d1dx5k1	K:345-387
2j	d1dx5k2	K:388-422
2k	d1dx5k3	K:423-462
2l	d1dx5l1	L:345-387

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Thrombin, subunit H (1535)

Homologous Superfamily: Trypsin-like serine proteases (1488)

Human (Homo sapiens) (615)

1a	1dx5M02	M:28-120,M:233-246
1b	1dx5M01	M:16-27,M:121-232
1c	1dx5N01	N:16-27,N:121-232
1d	1dx5O01	O:16-27,O:121-232
1e	1dx5P01	P:16-27,P:121-232
1f	1dx5N02	N:28-120,N:233-246
1g	1dx5O02	O:28-120,O:233-246
1h	1dx5P02	P:28-120,P:233-246

Architecture: Ribbon (789)

Topology: Laminin (270)

Homologous Superfamily: Laminin (263)

Human (Homo sapiens) (195)

2a	1dx5I01	I:345-389
2b	1dx5J01	J:345-389
2c	1dx5K01	K:345-389
2d	1dx5L01	L:345-389
2e	1dx5I03	I:423-462
2f	1dx5J03	J:423-462
2g	1dx5K03	K:423-462
2h	1dx5L03	L:423-462
2i	1dx5I02	I:390-422
2j	1dx5J02	J:390-422
2k	1dx5K02	K:390-422
2l	1dx5L02	L:390-422

(no "Pfam Domain" information available for 1DX5)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,M,N,O,P (THRB_HUMAN | P00734)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0008083	growth factor activity	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0070053	thrombospondin receptor activity	Combining with thrombospondin and transmitting the signal to initiate a change in cell activity.
biological process
	GO:0006888	ER to Golgi vesicle-mediated transport	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
	GO:0006953	acute-phase response	An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
	GO:0007596	blood coagulation	The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
	GO:0007597	blood coagulation, intrinsic pathway	A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X.
	GO:0007166	cell surface receptor signaling pathway	A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0071260	cellular response to mechanical stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
	GO:0042730	fibrinolysis	A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
	GO:0007599	hemostasis	The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
	GO:0050900	leukocyte migration	The movement of a leukocyte within or between different tissues and organs of the body.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0048712	negative regulation of astrocyte differentiation	Any process that stops, prevents, or reduces the frequency, rate or extent of astrocyte differentiation.
	GO:0051918	negative regulation of fibrinolysis	Any process that stops, prevents, or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots.
	GO:0010544	negative regulation of platelet activation	Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue.
	GO:0045861	negative regulation of proteolysis	Any process that stops, prevents, or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
	GO:0017187	peptidyl-glutamic acid carboxylation	The gamma-carboxylation of peptidyl-glutamic acid; catalyzed by the vitamin K dependent gamma-glutamyl carboxylase.
	GO:0030168	platelet activation	A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
	GO:0030194	positive regulation of blood coagulation	Any process that activates or increases the frequency, rate or extent of blood coagulation.
	GO:0030307	positive regulation of cell growth	Any process that activates or increases the frequency, rate, extent or direction of cell growth.
	GO:0008284	positive regulation of cell proliferation	Any process that activates or increases the rate or extent of cell proliferation.
	GO:0032967	positive regulation of collagen biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
	GO:0014068	positive regulation of phosphatidylinositol 3-kinase signaling	Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
	GO:1900738	positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway	Any process that activates or increases the frequency, rate or extent of phospholipase C-activating G-protein coupled receptor signaling pathway.
	GO:0001934	positive regulation of protein phosphorylation	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
	GO:2000379	positive regulation of reactive oxygen species metabolic process	Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process.
	GO:0051281	positive regulation of release of sequestered calcium ion into cytosol	Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0030193	regulation of blood coagulation	Any process that modulates the frequency, rate or extent of blood coagulation.
	GO:0008360	regulation of cell shape	Any process that modulates the surface configuration of a cell.
	GO:0051480	regulation of cytosolic calcium ion concentration	Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings.
	GO:0010468	regulation of gene expression	Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0014854	response to inactivity	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inactivity stimulus.
	GO:0009611	response to wounding	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
	GO:0006465	signal peptide processing	The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell.
cellular component
	GO:0005796	Golgi lumen	The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0005788	endoplasmic reticulum lumen	The volume enclosed by the membranes of the endoplasmic reticulum.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain I,J,K,L (TRBM_HUMAN | P07204)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
	GO:0004888	transmembrane signaling receptor activity	Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
	GO:0007596	blood coagulation	The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
	GO:0007565	female pregnancy	The set of physiological processes that allow an embryo or foetus to develop within the body of a female animal. It covers the time from fertilization of a female ovum by a male spermatozoon until birth.
	GO:0007599	hemostasis	The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
	GO:0050900	leukocyte migration	The movement of a leukocyte within or between different tissues and organs of the body.
	GO:0030195	negative regulation of blood coagulation	Any process that stops, prevents, or reduces the frequency, rate or extent of blood coagulation.
	GO:0051918	negative regulation of fibrinolysis	Any process that stops, prevents, or reduces the frequency, rate or extent of fibrinolysis, an ongoing process that solubilizes fibrin, resulting in the removal of small blood clots.
	GO:0010544	negative regulation of platelet activation	Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue.
	GO:0010165	response to X-ray	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz).
	GO:0051591	response to cAMP	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
	GO:0032496	response to lipopolysaccharide	Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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		Ser P:36A - Pro P:37	[ RasMol ]

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	1dx5
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(no "Related Entries Specified in the PDB File" available for 1DX5)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 29)

Sites (21, 21)

SS Bonds (52, 52)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (9, 36)

PROSITE Motifs (7, 32)

Exons (8, 36)

Sequences/Alignments

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SCOP Domains (2, 16)

CATH Domains (2, 20)

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Gene Ontology (63, 72)

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Related Entries Specified in the PDB File