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(-) Description

Title :  CRYSTAL STRUCTURE OF ANNEXIN 24(CA32) FROM CAPSICUM ANNUUM
 
Authors :  A. Hofmann, J. Proust, A. Dorowski, R. Schantz, R. Huber
Date :  06 Dec 99  (Deposition) - 06 Dec 00  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Biol. Unit 4:  A (1x),B (1x)
Keywords :  Plant Annexin, Capsicum Annuum, Bell Pepper, Calcium Binding Protein, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Hofmann, J. Proust, A. Dorowski, R. Schantz, R. Huber
Annexin 24 From Capsicum Annuum. X-Ray Structure And Biochemical Characterization.
J. Biol. Chem. V. 275 8072 2000
PubMed-ID: 10713128  |  Reference-DOI: 10.1074/JBC.275.11.8072
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANNEXIN 24(CA32)
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PRSET_5D
    Organism Scientific: CAPSICUM ANNUUM
    Organism Taxid: 4072
    Other Details: N-TERMINAL FUSION MAHHHHHH

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)
Biological Unit 4 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 33)

Asymmetric Unit (1, 33)
No.NameCountTypeFull Name
1SO433Ligand/IonSULFATE ION
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1SO414Ligand/IonSULFATE ION
Biological Unit 2 (1, 19)
No.NameCountTypeFull Name
1SO419Ligand/IonSULFATE ION
Biological Unit 3 (1, 19)
No.NameCountTypeFull Name
1SO419Ligand/IonSULFATE ION
Biological Unit 4 (1, 19)
No.NameCountTypeFull Name
1SO419Ligand/IonSULFATE ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:83 , GLU A:102 , ASP A:268 , SO4 A:809BINDING SITE FOR RESIDUE SO4 A 801
02AC2SOFTWAREHIS A:98 , ARG A:136 , TYR A:137 , ARG B:506 , TRP B:507BINDING SITE FOR RESIDUE SO4 A 802
03AC3SOFTWAREARG A:106 , TRP A:107 , HOH A:1168 , ARG B:536 , TYR B:537BINDING SITE FOR RESIDUE SO4 A 803
04AC4SOFTWARELYS A:109 , ASN A:111 , HIS A:148 , THR A:149 , THR A:150 , HIS A:153BINDING SITE FOR RESIDUE SO4 A 804
05AC5SOFTWAREHIS A:17 , HIS A:153 , ASP A:232 , GLU A:233 , PHE A:234 , HOH A:1170 , ARG B:475BINDING SITE FOR RESIDUE SO4 A 805
06AC6SOFTWARETYR A:247 , PRO A:248 , GLU A:249 , HIS A:250BINDING SITE FOR RESIDUE SO4 A 806
07AC7SOFTWARETYR B:547BINDING SITE FOR RESIDUE SO4 A 807
08AC8SOFTWAREARG A:130 , SER A:140 , LEU A:141 , GLU A:142 , TYR B:564BINDING SITE FOR RESIDUE SO4 A 808
09AC9SOFTWAREGLU A:102 , THR A:108 , ASP A:268 , HIS A:269 , ARG A:272 , SO4 A:801 , THR B:478BINDING SITE FOR RESIDUE SO4 A 809
10BC1SOFTWAREARG A:306 , GLY A:307 , HOH A:866 , HOH A:882 , ARG B:663BINDING SITE FOR RESIDUE SO4 A 810
11BC2SOFTWARELEU A:225 , GLU A:229 , ARG A:239 , LYS A:243BINDING SITE FOR RESIDUE SO4 A 811
12BC3SOFTWAREGLU A:76 , HOH A:1100BINDING SITE FOR RESIDUE SO4 A 812
13BC4SOFTWARESER A:122 , PRO A:123 , LYS A:124BINDING SITE FOR RESIDUE SO4 A 813
14BC5SOFTWAREHIS A:6 , HIS A:7 , ALA A:10 , LYS A:283 , PHE B:465BINDING SITE FOR RESIDUE SO4 A 814
15BC6SOFTWARELYS B:509 , ASN B:511 , HIS B:548 , THR B:549 , THR B:550 , HIS B:553 , HOH B:1162BINDING SITE FOR RESIDUE SO4 B 815
16BC7SOFTWARETYR B:647 , PRO B:648 , GLU B:649 , HIS B:650BINDING SITE FOR RESIDUE SO4 B 817
17BC8SOFTWAREGLU B:654 , ASP B:658 , SO4 B:832BINDING SITE FOR RESIDUE SO4 B 818
18BC9SOFTWAREGLU A:170 , ASP A:172 , GLN A:208 , LYS B:539BINDING SITE FOR RESIDUE SO4 B 819
19CC1SOFTWAREASN B:610 , ASN B:614BINDING SITE FOR RESIDUE SO4 B 820
20CC2SOFTWARETYR B:537 , ARG B:574 , SO4 B:825 , HOH B:1010BINDING SITE FOR RESIDUE SO4 B 821
21CC3SOFTWARESO4 B:832 , HOH B:924BINDING SITE FOR RESIDUE SO4 B 822
22CC4SOFTWAREGLY B:466 , GLU B:467 , ASP B:468 , HOH B:1023BINDING SITE FOR RESIDUE SO4 B 823
23CC5SOFTWAREARG A:106 , LEU B:490 , GLU B:494BINDING SITE FOR RESIDUE SO4 B 824
24CC6SOFTWARELYS B:501 , SO4 B:821BINDING SITE FOR RESIDUE SO4 B 825
25CC7SOFTWAREGLU A:143 , ALA A:146 , TYR A:147 , GLU B:579 , ARG B:599 , THR B:603 , ARG B:604BINDING SITE FOR RESIDUE SO4 B 826
26CC8SOFTWAREVAL B:487 , HIS B:498 , GLU B:502BINDING SITE FOR RESIDUE SO4 B 827
27CC9SOFTWARETHR A:78 , HOH A:1081 , SER B:510 , PHE B:512 , HIS B:669 , HOH B:936BINDING SITE FOR RESIDUE SO4 B 828
28DC1SOFTWARELYS B:505 , ARG B:506BINDING SITE FOR RESIDUE SO4 B 829
29DC2SOFTWAREHIS B:408 , MET B:409 , ALA B:410BINDING SITE FOR RESIDUE SO4 B 830
30DC3SOFTWAREGLU A:131 , LYS B:524BINDING SITE FOR RESIDUE SO4 B 831
31DC4SOFTWAREARG B:639 , SO4 B:818 , SO4 B:822BINDING SITE FOR RESIDUE SO4 B 832
32DC5SOFTWAREGLU B:476 , HIS B:479BINDING SITE FOR RESIDUE SO4 B 833

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DK5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DK5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DK5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DK5)

(-) Exons   (0, 0)

(no "Exon" information available for 1DK5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
 aligned with Q42657_CAPAN | Q42657 from UniProtKB/TrEMBL  Length:314

    Alignment length:316
                                1                                                                                                                                                                                                                                                                                                                       
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306      
         Q42657_CAPAN     - ----MASLTVPAHVPSAAEDCEQLRSAFKGWGTNEKLIISILAHRTAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVLVWTLDPSERDAHLAKEATKRWTKSNFVLVELACTRSPKELVLAREAYHARYKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGEEVDLRLAKAESKILHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEHGEDILKQLEDGDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKIIADEYQKRDSIPLGRAIAKDTRGDYESMLLALLGQE 312
               SCOP domains d1dk5a_ A: Plant annexin-like protein                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1dk5A01 A:5-90  [code=1.10.220.10, no name defined]                                   1dk5A02 A:91-162  [code=1.10.220.10, no name defined]                   -----------1dk5A04 A:174-243  [code=1.10.220.10, no name defined]                ----1dk5A03 A:248-320  [code=1.10.220.10, no name defined]                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh......hhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhh....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dk5 A   5 HHHHMASLTVPAHVPSAAEDCEQLRSAFKGWGTNEKLIISILAHRTAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVLVWTLDPSERDAHLAKEATKRWTKSNFVLVELACTRSPKELVLAREAYHARYKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGEEVDLRLAKAESKILHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEHGEDILKQLEDGDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKIIADEYQKRDSIPLGRAIAKDTRGDYESMLLALLGQE 320
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314      


Chain B from PDB  Type:PROTEIN  Length:314
 aligned with Q42657_CAPAN | Q42657 from UniProtKB/TrEMBL  Length:314

    Alignment length:314
                             1                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309    
         Q42657_CAPAN     - -MASLTVPAHVPSAAEDCEQLRSAFKGWGTNEKLIISILAHRTAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVLVWTLDPSERDAHLAKEATKRWTKSNFVLVELACTRSPKELVLAREAYHARYKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGEEVDLRLAKAESKILHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEHGEDILKQLEDGDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKIIADEYQKRDSIPLGRAIAKDTRGDYESMLLALLGQEE 313
               SCOP domains d1dk5b_ B: Plant annexin-like protein                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1dk5B01 B:408-490  [code=1.10.220.10, no name defined]                             1dk5B02 B:491-562  [code=1.10.220.10, no name defined]                  -----------1dk5B04 B:574-643  [code=1.10.220.10, no name defined]                ----1dk5B03 B:648-720  [code=1.10.220.10, no name defined]                   - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh......hhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dk5 B 408 HMASLTVPAHVPSAAEDCEQLRSAFKGWGTNEKLIISILAHRTAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVLVWTLDPSERDAHLAKEATKRWTKSNFVLVELACTRSPKELVLAREAYHARYKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGEEVDLRLAKAESKILHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEHGEDILKQLEDGDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKIIADEYQKRDSIPLGRAIAKDTRGDYESMLLALLGQEE 721
                                   417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DK5)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q42657_CAPAN | Q42657)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005544    calcium-dependent phospholipid binding    Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.

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