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(-) Description

Title :  CRYSTAL STRUCTURE OF LUMAZINE SYNTHASE FROM BRUCELLA ABORTUS
 
Authors :  B. C. Braden, C. A. Velikovsky, A. A. Cauerhff, I. Polikarpov, F. A. Goldbaum
Date :  28 Nov 99  (Deposition) - 24 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  A,B,C,D,E  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. C. Braden, C. A. Velikovsky, A. A. Cauerhff, I. Polikarpov, F. A. Goldbaum
Divergence In Macromolecular Assembly: X-Ray Crystallographic Structure Analysis Of Lumazine Synthase From Brucella Abortus.
J. Mol. Biol. V. 297 1031 2000
PubMed-ID: 10764570  |  Reference-DOI: 10.1006/JMBI.2000.3640
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUMAZINE SYNTHASE
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: BRUCELLA ABORTUS
    Organism Taxid: 235

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): ABCDE
Biological Unit 2 (2x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric Unit (1, 13)
No.NameCountTypeFull Name
1PO413Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 13)
No.NameCountTypeFull Name
1PO413Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 26)
No.NameCountTypeFull Name
1PO426Ligand/IonPHOSPHATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:55 , ALA A:56 , TYR A:57 , GLU A:58 , VAL A:92BINDING SITE FOR RESIDUE PO4 A 190
02AC2SOFTWAREHIS A:89 , HOH A:2014 , LYS E:135BINDING SITE FOR RESIDUE PO4 A 191
03AC3SOFTWAREGLY A:84 , GLY A:85 , ILE A:86 , TYR A:87 , HIS A:89 , HOH A:2026 , HIS C:121A , HIS C:124BINDING SITE FOR RESIDUE PO4 A 192
04AC4SOFTWAREGLY B:55 , ALA B:56 , TYR B:57 , PO4 B:194BINDING SITE FOR RESIDUE PO4 B 193
05AC5SOFTWARELYS A:135 , HIS B:89 , PO4 B:193BINDING SITE FOR RESIDUE PO4 B 194
06AC6SOFTWAREGLY B:84 , GLY B:85 , ILE B:86 , TYR B:87 , HIS B:89 , HIS B:121A , HIS B:124BINDING SITE FOR RESIDUE PO4 B 195
07AC7SOFTWAREGLY C:55 , ALA C:56 , TYR C:57 , GLU C:58 , HOH C:2016BINDING SITE FOR RESIDUE PO4 C 196
08AC8SOFTWAREHIS A:121A , HIS A:124 , GLY C:84 , GLY C:85 , ILE C:86 , TYR C:87 , HIS C:89 , HOH C:2031BINDING SITE FOR RESIDUE PO4 C 197
09AC9SOFTWAREGLY D:55 , ALA D:56 , TYR D:57 , GLU D:58BINDING SITE FOR RESIDUE PO4 D 198
10BC1SOFTWAREGLY D:84 , GLY D:85 , ILE D:86 , TYR D:87 , HIS D:89 , HIS E:124BINDING SITE FOR RESIDUE PO4 D 199
11BC2SOFTWAREGLY E:55 , ALA E:56 , TYR E:57 , GLU E:58BINDING SITE FOR RESIDUE PO4 E 200
12BC3SOFTWARELYS D:135 , HIS E:89BINDING SITE FOR RESIDUE PO4 E 201
13BC4SOFTWAREHIS D:124 , GLY E:84 , GLY E:85 , ILE E:86 , TYR E:87 , HIS E:89BINDING SITE FOR RESIDUE PO4 E 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DI0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DI0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DI0)

(-) Exons   (0, 0)

(no "Exon" information available for 1DI0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
 aligned with RISB2_BRUA2 | Q2YKV1 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:148
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148        
         RISB2_BRUA2      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  156
               SCOP domains d1di0a_ A: Lumazine synthase                                                                                                                         SCOP domains
               CATH domains 1di0A00 A:11-155  [code=3.40.50.960, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 A   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  155
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147        
                                                                                                                                        121A||                                  
                                                                                                                                         121B|                                  
                                                                                                                                          121C                                  


Chain A from PDB  Type:PROTEIN  Length:148
 aligned with RISB2_BRUAB | P61711 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:148
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148        
         RISB2_BRUAB      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  156
               SCOP domains d1di0a_ A: Lumazine synthase                                                                                                                         SCOP domains
               CATH domains 1di0A00 A:11-155  [code=3.40.50.960, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 A   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  155
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147        
                                                                                                                                        121A||                                  
                                                                                                                                         121B|                                  
                                                                                                                                          121C                                  


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with RISB2_BRUA2 | Q2YKV1 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:148
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148        
         RISB2_BRUA2      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  156
               SCOP domains d1di0b_ B: Lumazine synthase                                                                                                                         SCOP domains
               CATH domains 1di0B00 B:11-155  [code=3.40.50.960, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 B   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  155
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147        
                                                                                                                                        121A||                                  
                                                                                                                                         121B|                                  
                                                                                                                                          121C                                  


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with RISB2_BRUAB | P61711 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:148
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148        
         RISB2_BRUAB      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  156
               SCOP domains d1di0b_ B: Lumazine synthase                                                                                                                         SCOP domains
               CATH domains 1di0B00 B:11-155  [code=3.40.50.960, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 B   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIAA  155
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147        
                                                                                                                                        121A||                                  
                                                                                                                                         121B|                                  
                                                                                                                                          121C                                  


Chain C from PDB  Type:PROTEIN  Length:146
 aligned with RISB2_BRUA2 | Q2YKV1 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:146
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149      
         RISB2_BRUA2     10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  155
               SCOP domains d1di0c_ C: Lumazine synthase                                                                                                                       SCOP domains
               CATH domains 1di0C00 C:12-154  [code=3.40.50.960, no name defined]                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 C   12 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  154
                                    21        31        41        51        61        71        81        91       101       111       121|||    128       138       148      
                                                                                                                                       121A||                                 
                                                                                                                                        121B|                                 
                                                                                                                                         121C                                 


Chain C from PDB  Type:PROTEIN  Length:146
 aligned with RISB2_BRUAB | P61711 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:146
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149      
         RISB2_BRUAB     10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  155
               SCOP domains d1di0c_ C: Lumazine synthase                                                                                                                       SCOP domains
               CATH domains 1di0C00 C:12-154  [code=3.40.50.960, no name defined]                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 C   12 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  154
                                    21        31        41        51        61        71        81        91       101       111       121|||    128       138       148      
                                                                                                                                       121A||                                 
                                                                                                                                        121B|                                 
                                                                                                                                         121C                                 


Chain D from PDB  Type:PROTEIN  Length:147
 aligned with RISB2_BRUA2 | Q2YKV1 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:147
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       
         RISB2_BRUA2      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  155
               SCOP domains d1di0d_ D: Lumazine synthase                                                                                                                        SCOP domains
               CATH domains 1di0D00 D:11-154  [code=3.40.50.960, no name defined]                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 D   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  154
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147       
                                                                                                                                        121A||                                 
                                                                                                                                         121B|                                 
                                                                                                                                          121C                                 


Chain D from PDB  Type:PROTEIN  Length:147
 aligned with RISB2_BRUAB | P61711 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:147
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       
         RISB2_BRUAB      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  155
               SCOP domains d1di0d_ D: Lumazine synthase                                                                                                                        SCOP domains
               CATH domains 1di0D00 D:11-154  [code=3.40.50.960, no name defined]                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 D   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  154
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147       
                                                                                                                                        121A||                                 
                                                                                                                                         121B|                                 
                                                                                                                                          121C                                 


Chain E from PDB  Type:PROTEIN  Length:146
 aligned with RISB2_BRUA2 | Q2YKV1 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:146
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148      
         RISB2_BRUA2      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI  154
               SCOP domains d1di0e_ E: Lumazine synthase                                                                                                                       SCOP domains
               CATH domains 1di0E00 E:11-153  [code=3.40.50.960, no name defined]                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 E   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI  153
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147      
                                                                                                                                        121A||                                
                                                                                                                                         121B|                                
                                                                                                                                          121C                                


Chain E from PDB  Type:PROTEIN  Length:146
 aligned with RISB2_BRUAB | P61711 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:146
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148      
         RISB2_BRUAB      9 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYRHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI  154
               SCOP domains d1di0e_ E: Lumazine synthase                                                                                                                       SCOP domains
               CATH domains 1di0E00 E:11-153  [code=3.40.50.960, no name defined]                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhh....eeeeeee........hhhhhhhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1di0 E   11 TSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI  153
                                    20        30        40        50        60        70        80        90       100       110       120 |||   127       137       147      
                                                                                                                                        121A||                                
                                                                                                                                         121B|                                
                                                                                                                                          121C
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DI0)

(-) Gene Ontology  (6, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (RISB2_BRUA2 | Q2YKV1)
molecular function
    GO:0000906    6,7-dimethyl-8-ribityllumazine synthase activity    Catalysis of the reaction: 3,4-dihydroxy-2-butanone-4-phosphate + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-ribityllumazine + phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0009231    riboflavin biosynthetic process    The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009349    riboflavin synthase complex    An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine.

Chain A,B,C,D,E   (RISB2_BRUAB | P61711)
molecular function
    GO:0000906    6,7-dimethyl-8-ribityllumazine synthase activity    Catalysis of the reaction: 3,4-dihydroxy-2-butanone-4-phosphate + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-ribityllumazine + phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009231    riboflavin biosynthetic process    The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009349    riboflavin synthase complex    An flavoprotein that catalyzes the reaction the breakdown of dimethyl(ribityl)lumazine to form riboflavin and ribitylamino-amino-dihydroxypyrimidine.

 Visualization

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Asymmetric Unit
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