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Asym. Unit
Info
Asym.Unit (125 KB)
Biol.Unit 1 (119 KB)
Biol.Unit 2 (235 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LUMAZINE SYNTHASE FROM BRUCELLA ABORTUS
Authors
:
B. C. Braden, C. A. Velikovsky, A. A. Cauerhff, I. Polikarpov, F. A. Goldbaum
Date
:
28 Nov 99 (Deposition) - 24 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: A,B,C,D,E (2x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. C. Braden, C. A. Velikovsky, A. A. Cauerhff, I. Polikarpov, F. A. Goldbaum
Divergence In Macromolecular Assembly: X-Ray Crystallographic Structure Analysis Of Lumazine Synthase From Brucella Abortus.
J. Mol. Biol. V. 297 1031 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 13)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
1i: PHOSPHATE ION (PO4i)
1j: PHOSPHATE ION (PO4j)
1k: PHOSPHATE ION (PO4k)
1l: PHOSPHATE ION (PO4l)
1m: PHOSPHATE ION (PO4m)
View:
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No.
Name
Count
Type
Full Name
1
PO4
13
Ligand/Ion
PHOSPHATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:55 , ALA A:56 , TYR A:57 , GLU A:58 , VAL A:92
BINDING SITE FOR RESIDUE PO4 A 190
02
AC2
SOFTWARE
HIS A:89 , HOH A:2014 , LYS E:135
BINDING SITE FOR RESIDUE PO4 A 191
03
AC3
SOFTWARE
GLY A:84 , GLY A:85 , ILE A:86 , TYR A:87 , HIS A:89 , HOH A:2026 , HIS C:121A , HIS C:124
BINDING SITE FOR RESIDUE PO4 A 192
04
AC4
SOFTWARE
GLY B:55 , ALA B:56 , TYR B:57 , PO4 B:194
BINDING SITE FOR RESIDUE PO4 B 193
05
AC5
SOFTWARE
LYS A:135 , HIS B:89 , PO4 B:193
BINDING SITE FOR RESIDUE PO4 B 194
06
AC6
SOFTWARE
GLY B:84 , GLY B:85 , ILE B:86 , TYR B:87 , HIS B:89 , HIS B:121A , HIS B:124
BINDING SITE FOR RESIDUE PO4 B 195
07
AC7
SOFTWARE
GLY C:55 , ALA C:56 , TYR C:57 , GLU C:58 , HOH C:2016
BINDING SITE FOR RESIDUE PO4 C 196
08
AC8
SOFTWARE
HIS A:121A , HIS A:124 , GLY C:84 , GLY C:85 , ILE C:86 , TYR C:87 , HIS C:89 , HOH C:2031
BINDING SITE FOR RESIDUE PO4 C 197
09
AC9
SOFTWARE
GLY D:55 , ALA D:56 , TYR D:57 , GLU D:58
BINDING SITE FOR RESIDUE PO4 D 198
10
BC1
SOFTWARE
GLY D:84 , GLY D:85 , ILE D:86 , TYR D:87 , HIS D:89 , HIS E:124
BINDING SITE FOR RESIDUE PO4 D 199
11
BC2
SOFTWARE
GLY E:55 , ALA E:56 , TYR E:57 , GLU E:58
BINDING SITE FOR RESIDUE PO4 E 200
12
BC3
SOFTWARE
LYS D:135 , HIS E:89
BINDING SITE FOR RESIDUE PO4 E 201
13
BC4
SOFTWARE
HIS D:124 , GLY E:84 , GLY E:85 , ILE E:86 , TYR E:87 , HIS E:89
BINDING SITE FOR RESIDUE PO4 E 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1di0a_ (A:)
1b: SCOP_d1di0b_ (B:)
1c: SCOP_d1di0c_ (C:)
1d: SCOP_d1di0d_ (D:)
1e: SCOP_d1di0e_ (E:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Lumazine synthase
(27)
Superfamily
:
Lumazine synthase
(27)
Family
:
Lumazine synthase
(26)
Protein domain
:
Lumazine synthase
(19)
Brucella abortus [TaxId: 235]
(2)
1a
d1di0a_
A:
1b
d1di0b_
B:
1c
d1di0c_
C:
1d
d1di0d_
D:
1e
d1di0e_
E:
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1di0A00 (A:11-155)
1b: CATH_1di0B00 (B:11-155)
1c: CATH_1di0D00 (D:11-154)
1d: CATH_1di0C00 (C:12-154)
1e: CATH_1di0E00 (E:11-153)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Brucella abortus. Organism_taxid: 235.
(1)
1a
1di0A00
A:11-155
1b
1di0B00
B:11-155
1c
1di0D00
D:11-154
1d
1di0C00
C:12-154
1e
1di0E00
E:11-153
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Pfam Domains
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Asym.Unit (125 KB)
Header - Asym.Unit
Biol.Unit 1 (119 KB)
Header - Biol.Unit 1
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