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Title :   CRYSTAL STRUCTURE OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774

Authors :   J. M. Rebelo, S. Macieira, J. M. Dias, R. Huber, M. J. Romao

Date :   24 Nov 99 (Deposition) - 22 Mar 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A

Keywords :   Beta Half-Barrel, Four-Helix Bundle, Beta Barrel, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Rebelo, S. Macieira, J. M. Dias, R. Huber, C. S. Ascenso, F. Rusnak, J. J. Moura, I. Moura, M. J. Romao
Gene Sequence And Crystal Structure Of The Aldehyde Oxidoreductase From Desulfovibrio Desulfuricans Atcc 27774.
J. Mol. Biol. V. 297 135 2000
PubMed-ID: 10704312 | Reference-DOI: 10.1006/JMBI.2000.3552
(for further references see the PDB file header)

Molecule 1 - ALDEHYDE OXIDOREDUCTASE
	Atcc	:	27774
	Chains	:	A
	EC Number	:	1.2.-.-
	Engineered	:	YES
	Expression System	:	BACTERIA
	Expression System Common	:	EUBACTERIA
	Expression System Taxid	:	2
	Organism Scientific	:	DESULFOVIBRIO DESULFURICANS
	Organism Taxid	:	876

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	2MO	1	Ligand/Ion	MOLYBDENUM (IV)OXIDE
2	FES	2	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER
3	MCN	1	Ligand/Ion	PTERIN CYTOSINE DINUCLEOTIDE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:99 , CYS A:100 , GLY A:101 , CYS A:103 , CYS A:137 , ARG A:138 , CYS A:139 , ILE A:369	BINDING SITE FOR RESIDUE FES A 908
2	AC2	SOFTWARE	GLY A:39 , CYS A:40 , GLY A:41 , GLY A:43 , GLN A:44 , CYS A:45 , GLY A:46 , CYS A:48 , ARG A:58 , CYS A:60	BINDING SITE FOR RESIDUE FES A 909
3	AC3	SOFTWARE	GLY A:424 , PHE A:534 , ARG A:535 , ALA A:697 , GLY A:698 , GLU A:869 , HOH A:912 , MCN A:914	BINDING SITE FOR RESIDUE 2MO A 910
4	AC4	SOFTWARE	GLN A:99 , CYS A:139 , THR A:422 , PHE A:423 , GLY A:424 , ARG A:535 , TRP A:652 , HIS A:655 , GLY A:656 , GLN A:657 , GLY A:658 , GLY A:662 , ALA A:697 , GLY A:698 , GLY A:699 , SER A:700 , ARG A:701 , SER A:702 , GLN A:703 , ILE A:795 , LYS A:797 , CYS A:799 , ASN A:800 , VAL A:803 , VAL A:804 , GLN A:807 , SER A:865 , GLY A:866 , VAL A:867 , GLY A:868 , GLU A:869 , 2MO A:910 , HOH A:1029	BINDING SITE FOR RESIDUE MCN A 914

(no "SS Bond" information available for 1DGJ)

Asymmetric/Biological Unit

No.	Residues
1	Phe A:408	-	Pro A:409
2	Leu A:894	-	Pro A:895

(no "SAP(SNP)/Variant" information available for 1DGJ)

(no "PROSITE Motif" information available for 1DGJ)

(no "Exon" information available for 1DGJ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:906
 aligned with Q9REC4_DESDE | Q9REC4 from UniProtKB/TrEMBL  Length:907

    Alignment length:906
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         Q9REC4_DESDE     1 METKTLIVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAPDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAAILRGEKTVEEISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKVLTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSEANARAAAEKVKFDLELLPEYMSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATGRPCHLRYNYEQQQNYTGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDTTSSGQIPEVMSLPEMFDKMRPYYEESKKRVKERSTAEIKRGVGVALGVYGAGLDGPDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEMLIEGMRKPGGGFFTPAEMKAEGRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQGVGLALSEDYEDLKKHSTMGGAGIPSIKMIPDDIEIVYVETPRKDGPFGASGVGEMPLTAPHAAIINGIYNACGARVRHLPARPEKVLEAMP 906
               SCOP domains d1dgja2 A:1-80 Aldehyde oxidoreductase, N-terminal domain                       d1dgja1 A:81-193 Aldehyde oxidoreductase, domain 2                                                               d1dgja3 A:194-310 Aldehyde oxidoreductase, domain 3                                                                  d1dgja4 A:311-906 Aldehyde oxidoreductase                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1dgjA01 A:1-74  [code=3.10.20.30, no name defined]                        1dgjA02 A:75-193  [code=1.10.150.120, no name defined]                                                                 --------------1dgjA03 A:208-308  [code=3.90.1170.50, no name defined]                                              ----------------------1dgjA04 A:331-365,A:460-582        1dgjA05 A:366-459 Aldehyde Oxidoreductase; domain 4                                           1dgjA04 A:331-365,A:460-582 Aldehyde Oxidoreductase; domain 4                                                              1dgjA07 A:583-626,A:752-906                 1dgjA06 A:627-751 Aldehyde Oxidoreductase; domain 4                                                                          1dgjA07 A:583-626,A:752-906 Aldehyde Oxidoreductase; domain 4                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.ee.....eeee....hhhhhhhhh..................eeee..eeee.hhh.hhhh....eeehhhhh......hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhhhhhh...hhhhhh.................hhhhhhh....hhhhhhhhh....eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhh....ee...............ee.....ee.....eeeeeee.hhhhhhhhhh..eeeeee.....hhhhhhh............eeeeeeeee...hhhhhh....eeeeeeeee...........eeeeee.....eeeee...hhhhhhhhhhhhhh......eeeee.......hhhhh..hhhhhhhhhhhhh..eeee.hhhhhhhh......eeeeeeeee.....eeeeeeeeeee......hhhhhhhhhhhhh.......eeeeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeeeeee......eeeeeeee.....eeeee.......hhhhhhhhhhhhhhhhhh.hhh.eeeee..................hhhhhhhhhhhhhhhhhh........hhhhhhhh....eeeeeee................eeeeeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..................hhhhh...eeeee.......hhhh.....hhhhhhhhhhhhhhhhhhhh........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1dgj A   1 METKTLIVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAPDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAAILRGEKTVEEISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKVLTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSEANARAAAEKVKFDLELLPEYMSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATGRPCHLRYNYEQQQNYTGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDTTSSGQIPEVMSLPEMFDKMRPYYEESKKRVKERSTAEIKRGVGVALGVYGAGLDGPDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEMLIEGMRKPGGGFFTPAEMKAEGRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQGVGLALSEDYEDLKKHSTMGGAGIPSIKMIPDDIEIVYVETPRKDGPFGASGVGEMPLTAPHAAIINGIYNACGARVRHLPARPEKVLEAMP 906
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1DGJ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q9REC4_DESDE | Q9REC4)

molecular function
	GO:0051537	2 iron, 2 sulfur cluster binding	Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Leu A:894 - Pro A:895	[ RasMol ]
		Phe A:408 - Pro A:409	[ RasMol ]

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1alo	1ALO IS AN HOMOLOGOUS PROTEIN FROM THE XANTHINE OXIDASE FAMILY OF ENZYMES.

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Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

SS Bonds (0, 0)

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