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1DGJ
Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774
Authors
:
J. M. Rebelo, S. Macieira, J. M. Dias, R. Huber, M. J. Romao
Date
:
24 Nov 99 (Deposition) - 22 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Half-Barrel, Four-Helix Bundle, Beta Barrel, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Rebelo, S. Macieira, J. M. Dias, R. Huber, C. S. Ascenso, F. Rusnak, J. J. Moura, I. Moura, M. J. Romao
Gene Sequence And Crystal Structure Of The Aldehyde Oxidoreductase From Desulfovibrio Desulfuricans Atcc 27774.
J. Mol. Biol. V. 297 135 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: MOLYBDENUM (IV)OXIDE (2MOa)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3a: PTERIN CYTOSINE DINUCLEOTIDE (MCNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2MO
1
Ligand/Ion
MOLYBDENUM (IV)OXIDE
2
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
MCN
1
Ligand/Ion
PTERIN CYTOSINE DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:99 , CYS A:100 , GLY A:101 , CYS A:103 , CYS A:137 , ARG A:138 , CYS A:139 , ILE A:369
BINDING SITE FOR RESIDUE FES A 908
2
AC2
SOFTWARE
GLY A:39 , CYS A:40 , GLY A:41 , GLY A:43 , GLN A:44 , CYS A:45 , GLY A:46 , CYS A:48 , ARG A:58 , CYS A:60
BINDING SITE FOR RESIDUE FES A 909
3
AC3
SOFTWARE
GLY A:424 , PHE A:534 , ARG A:535 , ALA A:697 , GLY A:698 , GLU A:869 , HOH A:912 , MCN A:914
BINDING SITE FOR RESIDUE 2MO A 910
4
AC4
SOFTWARE
GLN A:99 , CYS A:139 , THR A:422 , PHE A:423 , GLY A:424 , ARG A:535 , TRP A:652 , HIS A:655 , GLY A:656 , GLN A:657 , GLY A:658 , GLY A:662 , ALA A:697 , GLY A:698 , GLY A:699 , SER A:700 , ARG A:701 , SER A:702 , GLN A:703 , ILE A:795 , LYS A:797 , CYS A:799 , ASN A:800 , VAL A:803 , VAL A:804 , GLN A:807 , SER A:865 , GLY A:866 , VAL A:867 , GLY A:868 , GLU A:869 , 2MO A:910 , HOH A:1029
BINDING SITE FOR RESIDUE MCN A 914
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1dgja1 (A:81-193)
2a: SCOP_d1dgja3 (A:194-310)
3a: SCOP_d1dgja2 (A:1-80)
4a: SCOP_d1dgja4 (A:311-906)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
CO dehydrogenase ISP C-domain like
(45)
Superfamily
:
CO dehydrogenase ISP C-domain like
(45)
Family
:
CO dehydrogenase ISP C-domain like
(42)
Protein domain
:
Aldehyde oxidoreductase, domain 2
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(1)
1a
d1dgja1
A:81-193
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
alpha/beta-Hammerhead
(191)
Superfamily
:
CO dehydrogenase molybdoprotein N-domain-like
(44)
Family
:
CO dehydrogenase molybdoprotein N-domain-like
(34)
Protein domain
:
Aldehyde oxidoreductase, domain 3
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(1)
2a
d1dgja3
A:194-310
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
2Fe-2S ferredoxin-like
(174)
Family
:
2Fe-2S ferredoxin domains from multidomain proteins
(82)
Protein domain
:
Aldehyde oxidoreductase, N-terminal domain
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(1)
3a
d1dgja2
A:1-80
Fold
:
Molybdenum cofactor-binding domain
(44)
Superfamily
:
Molybdenum cofactor-binding domain
(44)
Family
:
Molybdenum cofactor-binding domain
(44)
Protein domain
:
Aldehyde oxidoreductase
(9)
Desulfovibrio desulfuricans [TaxId: 876]
(1)
4a
d1dgja4
A:311-906
[
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CATH Domains
(4, 7)
Info
all CATH domains
1a: CATH_1dgjA04 (A:331-365,A:460-582)
1b: CATH_1dgjA06 (A:627-751)
1c: CATH_1dgjA07 (A:583-626,A:752-906)
1d: CATH_1dgjA05 (A:366-459)
2a: CATH_1dgjA03 (A:208-308)
3a: CATH_1dgjA01 (A:1-74)
4a: CATH_1dgjA02 (A:75-193)
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)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Aldehyde Oxidoreductase; domain 4
(20)
Homologous Superfamily
:
Aldehyde Oxidoreductase; domain 4
(20)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(1)
1a
1dgjA04
A:331-365,A:460-582
1b
1dgjA06
A:627-751
1c
1dgjA07
A:583-626,A:752-906
1d
1dgjA05
A:366-459
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aldehyde Oxidoreductase; domain 3
(111)
Homologous Superfamily
:
[code=3.90.1170.50, no name defined]
(20)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(1)
2a
1dgjA03
A:208-308
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(1)
3a
1dgjA01
A:1-74
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.120, no name defined]
(29)
Desulfovibrio desulfuricans. Organism_taxid: 876.
(1)
4a
1dgjA02
A:75-193
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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