Chain A from PDB Type:PROTEIN Length:223
aligned with T2B2_BACIU | Q45488 from UniProtKB/Swiss-Prot Length:223
Alignment length:223
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
T2B2_BACIU 1 MKIDITDYNHADEILNPQLWKEIEETLLKMPLHVKASDQASKVGSLIFDPVGTNQYIKDELVPKHWKNNIPIPKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKSNMDIDEEGMKVAIIITKGHMFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKRYSRTITKRDTVKGKVIDTNTPNTRRRKRGTIVTY 223
SCOP domains d1dfma_ A: Restriction endonuclease BglII SCOP domains
CATH domains -1dfmA00 A:2-223 [code=3.40.91.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhhhhh.eeeee.........eeehhhhhhhhhhhhhhhhh.eeeee.hhhhhhhh.eeeeee..eeeee....hhhhhhhhhhhhhhhhhh.........eeeeeee...........hhhhhhhhhhhhhhh......eeeeeee......eeeeeeee........eeeeeeeeeeee.............eeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1dfm A 1 mKIDITDYNHADEILNPQLWKEIEETLLKmPLHVKASDQASKVGSLIFDPVGTNQYIKDELVPKHWKNNIPIPKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKSNmDIDEEGmKVAIIITKGHmFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKRYSRTITKRDTVKGKVIDTNTPNTRRRKRGTIVTY 223
| 10 20 30 40 50 60 70 80 90 100 110 |120 | 130 | 140 150 160 170 180 190 200 210 220
| 30-MSE 117-MSE | 135-MSE
1-MSE 124-MSE
Chain B from PDB Type:PROTEIN Length:218
aligned with T2B2_BACIU | Q45488 from UniProtKB/Swiss-Prot Length:223
Alignment length:223
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
T2B2_BACIU 1 MKIDITDYNHADEILNPQLWKEIEETLLKMPLHVKASDQASKVGSLIFDPVGTNQYIKDELVPKHWKNNIPIPKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKSNMDIDEEGMKVAIIITKGHMFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKRYSRTITKRDTVKGKVIDTNTPNTRRRKRGTIVTY 223
SCOP domains d1dfmb_ B: Restriction endonuclease BglII SCOP domains
CATH domains -1dfmB00 B:2-223 [code=3.40.91.20, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhh..eeehhhhhhhhhhhhhhhhh.eeeee.hhhhhhhh.eeeeee..eeeee....hhhhhhhhhhhhhhhhh..........eeeeeee...........hhhhhhhhhhhhhhh......eeeeeee......eeeeeeee........eeeeeeeeeeee....-----....eeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1dfm B 1 mKIDITDYNHADEILNPQLWKEIEETLLKmPLHVKASDQASKVGSLIFDPVGTNQYIKDELVPKHWKNNIPIPKRFDFLGTDIDFGKRDTLVEVQFSNYPFLLNNTVRSELFHKSNmDIDEEGmKVAIIITKGHmFPASNSSLYYEQAQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKRYSRTITKRDTVKGKVIDTNT-----RKRGTIVTY 223
| 10 20 30 40 50 60 70 80 90 100 110 |120 | 130 | 140 150 160 170 180 190 200 |- | 220
1-MSE 30-MSE 117-MSE | 135-MSE 209 215
124-MSE
Chain C from PDB Type:DNA Length:16
1dfm C 1 TATTATAGATCTATAA 16
10
Chain D from PDB Type:DNA Length:16
1dfm D 17 TATTATAGATCTATAA 32
26
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |