1D4C - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE UNCOMPLEXED FORM OF THE FLAVOCYTOCHROME C FUMARATE REDUCTASE OF SHEWANELLA PUTREFACIENS STRAIN MR-1

Authors :   D. Leys, A. S. Tsapin, T. E. Meyer, M. A. Cusanovich, J. J. Van Beeumen

Date :   03 Oct 99 (Deposition) - 01 Dec 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Tetraheme Flavocytochrome C, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Leys, A. S. Tsapin, K. H. Nealson, T. E. Meyer, M. A. Cusanovich, J. J. Van Beeumen
Structure And Mechanism Of The Flavocytochrome C Fumarate Reductase Of Shewanella Putrefaciens Mr-1.
Nat. Struct. Biol. V. 6 1113 1999
PubMed-ID: 10581551 | Reference-DOI: 10.1038/70051
(for further references see the PDB file header)

Molecule 1 - FLAVOCYTOCHROME C FUMARATE REDUCTASE
	Chains	:	A, B, C, D
	EC Number	:	1.3.99.1
	Organism Scientific	:	SHEWANELLA ONEIDENSIS
	Organism Taxid	:	70863
	Strain	:	MR1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 23)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	HEM	16	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 6)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG C:401 , HIS C:503 , ARG C:544 , GLY C:546 , GLY C:547 , FAD C:800	BINDING SITE FOR RESIDUE SO4 C 814
02	AC2	SOFTWARE	MET B:235 , MET B:374 , ARG B:401 , HIS B:503 , ARG B:544 , GLY B:546 , GLY B:547 , FAD B:700	BINDING SITE FOR RESIDUE SO4 B 714
03	AC3	SOFTWARE	ARG D:401 , HIS D:503 , ARG D:544 , GLY D:546 , GLY D:547 , FAD D:900	BINDING SITE FOR RESIDUE SO4 D 914
04	AC4	SOFTWARE	VAL A:57 , SER A:62 , HIS A:63 , LEU A:64 , TYR A:83 , CYS A:84 , CYS A:87 , HIS A:88 , PHE A:90 , LEU A:166 , HIS A:337 , VAL A:373 , GLY A:433 , TYR A:434 , LEU A:437 , HOH A:612	BINDING SITE FOR RESIDUE HEM A 601
05	AC5	SOFTWARE	HIS A:42 , LEU A:45 , LEU A:48 , PRO A:59 , HIS A:60 , ILE A:68 , ALA A:69 , CYS A:70 , CYS A:73 , HIS A:74 , ASP A:93 , MET A:94 , ILE C:202 , TYR C:360	BINDING SITE FOR RESIDUE HEM A 602
06	AC6	SOFTWARE	ALA A:6 , GLY A:14 , CYS A:15 , CYS A:18 , HIS A:19 , LYS A:23 , THR A:71 , LYS A:75 , GLY A:76 , HIS A:77 , TYR A:297 , HOH A:649	BINDING SITE FOR RESIDUE HEM A 603
07	AC7	SOFTWARE	PHE A:8 , HIS A:9 , MET A:12 , SER A:17 , GLN A:37 , CYS A:38 , CYS A:41 , HIS A:42 , HIS A:74 , PRO A:95 , ARG C:200 , LYS C:324 , TYR C:325 , GLU C:359 , TYR C:360	BINDING SITE FOR RESIDUE HEM A 604
08	AC8	SOFTWARE	GLY A:132 , GLY A:134 , ALA A:136 , LEU A:154 , GLU A:155 , LYS A:156 , GLU A:157 , GLY A:162 , ASN A:163 , THR A:164 , LEU A:166 , ALA A:167 , ALA A:168 , GLY A:169 , GLY A:170 , VAL A:277 , ALA A:312 , GLY A:313 , THR A:335 , ASN A:336 , HIS A:337 , ASP A:343 , HIS A:503 , HIS A:504 , GLY A:533 , GLU A:534 , ARG A:544 , GLY A:547 , ASN A:548 , ALA A:549 , ILE A:550 , ILE A:553 , HOH A:605 , HOH A:607 , HOH A:608 , HOH A:638	BINDING SITE FOR RESIDUE FAD A 600
09	AC9	SOFTWARE	SER B:58 , SER B:62 , HIS B:63 , LEU B:64 , TYR B:83 , CYS B:84 , CYS B:87 , HIS B:88 , PHE B:90 , LEU B:166 , ALA B:168 , VAL B:373 , GLY B:433 , TYR B:434 , LEU B:437 , HEM B:602	BINDING SITE FOR RESIDUE HEM B 601
10	BC1	SOFTWARE	HIS B:42 , GLY B:43 , LEU B:45 , LEU B:48 , PRO B:59 , HIS B:60 , ILE B:68 , ALA B:69 , CYS B:70 , CYS B:73 , HIS B:74 , ASP B:93 , MET B:94 , PRO B:95 , HEM B:601 , HEM B:604 , GLU D:359 , TYR D:360	BINDING SITE FOR RESIDUE HEM B 602
11	BC2	SOFTWARE	ALA B:6 , GLY B:14 , CYS B:15 , CYS B:18 , HIS B:19 , LYS B:23 , GLY B:24 , GLY B:25 , THR B:71 , LYS B:75 , GLY B:76 , HIS B:77 , TYR B:297	BINDING SITE FOR RESIDUE HEM B 603
12	BC3	SOFTWARE	LEU B:5 , PHE B:8 , HIS B:9 , SER B:17 , GLN B:37 , CYS B:38 , CYS B:41 , HIS B:42 , HIS B:74 , PRO B:95 , HEM B:602 , ARG D:200 , TYR D:325 , ASP D:326 , PRO D:327 , TYR D:360 , HOH D:925	BINDING SITE FOR RESIDUE HEM B 604
13	BC4	SOFTWARE	ILE B:131 , GLY B:132 , SER B:133 , GLY B:134 , ALA B:136 , GLU B:155 , LYS B:156 , GLU B:157 , GLY B:162 , ASN B:163 , THR B:164 , ALA B:167 , GLY B:169 , GLY B:170 , ARG B:276 , VAL B:277 , ALA B:312 , GLY B:313 , THR B:335 , ASN B:336 , HIS B:337 , ASP B:343 , MET B:374 , HIS B:503 , HIS B:504 , GLY B:533 , GLU B:534 , ARG B:544 , GLY B:547 , ASN B:548 , ALA B:549 , ILE B:550 , ILE B:553 , SO4 B:714 , HOH B:728 , HOH B:733	BINDING SITE FOR RESIDUE FAD B 700
14	BC5	SOFTWARE	SER C:58 , SER C:62 , HIS C:63 , LEU C:64 , TYR C:83 , CYS C:84 , CYS C:87 , HIS C:88 , PHE C:90 , LEU C:166 , ALA C:168 , HIS C:337 , VAL C:373 , GLY C:433 , TYR C:434 , HIS C:436 , LEU C:437	BINDING SITE FOR RESIDUE HEM C 601
15	BC6	SOFTWARE	TYR A:360 , HIS C:42 , GLY C:43 , LEU C:45 , LEU C:48 , PRO C:59 , HIS C:60 , ILE C:68 , ALA C:69 , CYS C:70 , CYS C:73 , HIS C:74 , ASP C:93 , MET C:94 , HEM C:604	BINDING SITE FOR RESIDUE HEM C 602
16	BC7	SOFTWARE	ALA C:6 , GLY C:14 , CYS C:15 , CYS C:18 , HIS C:19 , LYS C:23 , GLY C:24 , VAL C:26 , LYS C:75 , GLY C:76 , HIS C:77 , TYR C:297	BINDING SITE FOR RESIDUE HEM C 603
17	BC8	SOFTWARE	ARG A:200 , TYR A:325 , PRO A:327 , GLU A:359 , TYR A:360 , LEU C:5 , PHE C:8 , HIS C:9 , SER C:17 , GLN C:37 , CYS C:38 , CYS C:41 , HIS C:42 , HIS C:74 , HEM C:602	BINDING SITE FOR RESIDUE HEM C 604
18	BC9	SOFTWARE	ILE C:131 , GLY C:132 , GLY C:134 , GLY C:135 , ALA C:136 , LEU C:154 , GLU C:155 , LYS C:156 , GLY C:162 , ASN C:163 , THR C:164 , ALA C:167 , ALA C:168 , GLY C:169 , GLY C:170 , ARG C:276 , VAL C:277 , ALA C:312 , THR C:335 , ASN C:336 , HIS C:337 , ASP C:343 , MET C:374 , HIS C:503 , HIS C:504 , GLY C:533 , GLU C:534 , ARG C:544 , GLY C:547 , ASN C:548 , ALA C:549 , ILE C:550 , ILE C:553 , SO4 C:814 , HOH C:822 , HOH C:826 , HOH C:831 , HOH C:844	BINDING SITE FOR RESIDUE FAD C 800
19	CC1	SOFTWARE	VAL D:57 , SER D:58 , SER D:62 , HIS D:63 , LEU D:64 , TYR D:83 , CYS D:84 , CYS D:87 , HIS D:88 , LEU D:166 , ALA D:168 , HIS D:337 , VAL D:373 , GLY D:433 , LEU D:437	BINDING SITE FOR RESIDUE HEM D 601
20	CC2	SOFTWARE	TYR B:360 , HIS D:42 , LEU D:45 , LEU D:48 , PRO D:59 , HIS D:60 , ILE D:68 , ALA D:69 , CYS D:70 , CYS D:73 , HIS D:74 , ASP D:93 , MET D:94 , HEM D:604	BINDING SITE FOR RESIDUE HEM D 602
21	CC3	SOFTWARE	ALA D:6 , GLY D:14 , CYS D:15 , CYS D:18 , HIS D:19 , LYS D:23 , GLY D:24 , GLY D:25 , LEU D:31 , THR D:71 , LYS D:75 , GLY D:76 , HIS D:77 , TYR D:297 , HEM D:604	BINDING SITE FOR RESIDUE HEM D 603
22	CC4	SOFTWARE	ARG B:200 , TYR B:325 , ASP B:326 , TYR B:360 , LEU D:5 , PHE D:8 , HIS D:9 , MET D:12 , SER D:17 , GLN D:37 , CYS D:38 , CYS D:41 , HIS D:42 , HIS D:74 , HEM D:602 , HEM D:603	BINDING SITE FOR RESIDUE HEM D 604
23	CC5	SOFTWARE	ILE D:131 , GLY D:132 , GLY D:134 , GLY D:135 , ALA D:136 , GLU D:155 , LYS D:156 , GLU D:157 , GLY D:162 , ASN D:163 , THR D:164 , ALA D:167 , GLY D:169 , GLY D:170 , VAL D:277 , ALA D:312 , GLY D:313 , THR D:335 , ASN D:336 , HIS D:337 , ASP D:343 , HIS D:503 , HIS D:504 , GLY D:533 , GLU D:534 , ARG D:544 , GLY D:547 , ASN D:548 , ALA D:549 , ILE D:550 , ILE D:553 , SO4 D:914 , HOH D:921 , HOH D:922 , HOH D:923 , HOH D:924 , HOH D:931	BINDING SITE FOR RESIDUE FAD D 900

(no "SS Bond" information available for 1D4C)

(no "Cis Peptide Bond" information available for 1D4C)

(no "SAP(SNP)/Variant" information available for 1D4C)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEON	35-118	4	A:10-93 B:10-93 C:10-93 D:10-93

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEON	35-118	1	A:10-93 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEON	35-118	1	- B:10-93 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEON	35-118	1	- - C:10-93 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MULTIHEME_CYTC	PS51008	Multiheme cytochrome c family profile.	FRDA_SHEON	35-118	1	- - - D:10-93

(no "Exon" information available for 1D4C)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:570
 aligned with FRDA_SHEON | P83223 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:570
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595
           FRDA_SHEON    26 APEVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 595
               SCOP domains d1d4ca1 A:1-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain                d1d4ca2 A:103-359,A:506-570 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1d4ca3 A:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1d4ca2 A:103-359,A:506-570                                       SCOP domains
               CATH domains 1d4cA01 A:1-102 Flavocytochrome C3; Chain A                                                           1d4cA02 A:103-360,A:508-566  [code=3.50.50.60, no name defined]                                                                                                                                                                                                   1d4cA03 A:361-505 Flavocytochrome C3; Chain A, domain 1                                                                                          --1d4cA02 A:103-360,A:508-566                                ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhh.................hhhhh........hhhhhh......................hhhhhhhhhhh...ee..eeee..hhhhhhhhhhhhh....eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee......hhhhhhhhhhhhhhhh..eee..eeeeeee........eeeeee...eeeeee..eeee.......hhhhhhhhhhhhh...........hhhhhhhhhh...ee....eeeeeeee....ee..hhhhhh..eee............hhhhhhhhhhh.....eeeeeehhhhhh..hhhhhhhh...eee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..ee......eee......eeeeeee.hhh...........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------MULTIHEME_CYTC  PDB: A:10-93 UniProt: 35-118                                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1d4c A   1 APEVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 570
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570

Chain B from PDB  Type:PROTEIN  Length:566
 aligned with FRDA_SHEON | P83223 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:568
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587        
           FRDA_SHEON    28 EVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 595
               SCOP domains d1d4cb1 B:3-102 Flavocytochrome c3 (respiratory fuma  rate reductase), N-terminal domain            d1d4cb2 B:103-359,B:506-570 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1d4cb3 B:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1d4cb2 B:103-359,B:506-570                                       SCOP domains
               CATH domains 1d4cB01 B:3-102 Flavocytochrome C3; Chain A                                                         1d4cB02 B:103-360,B:508-566  [code=3.50.50.60, no name defined]                                                                                                                                                                                                   1d4cB03 B:361-505 Flavocytochrome C3; Chain A, domain 1                                                                                          --1d4cB02 B:103-360,B:508-566                                ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhh...--............hhhhh........hhhhhh......................hhhhhhhhhhh...ee..eeee..hhhhhhhhhhhhhhh..eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeeeee.....eeeeeeee...eeeeee..eeee.......hhhhhhhhhhhhh..ee.......hhhhhhhhh....ee....eeeeeee.........hhhhhh..eee............hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhh...eee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..eee.....eee......eeeeeee....ee.........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------MULTIHEME_CYTC  PDB: B:10-93 UniProt: 35-118                                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d4c B   3 EVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPK--VSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 570
                                    12        22        32        42        52 |  |   62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562        
                                                                              54 57

Chain C from PDB  Type:PROTEIN  Length:568
 aligned with FRDA_SHEON | P83223 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:568
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587        
           FRDA_SHEON    28 EVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 595
               SCOP domains d1d4cc1 C:3-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain              d1d4cc2 C:103-359,C:506-570 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1d4cc3 C:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1d4cc2 C:103-359,C:506-570                                       SCOP domains
               CATH domains 1d4cC01 C:3-102 Flavocytochrome C3; Chain A                                                         1d4cC02 C:103-360,C:508-566  [code=3.50.50.60, no name defined]                                                                                                                                                                                                   1d4cC03 C:361-505 Flavocytochrome C3; Chain A, domain 1                                                                                          --1d4cC02 C:103-360,C:508-566                                ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.....................hhhhhhhhhhhhhhhhhhhhh.................hhhhh........hhhhhh......................hhhhhhhhhhh...ee..eeee..hhhhhhhhhhhhhh...eeee........hhhhh...ee...hhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeeee........eeeeee...eeeeee..eeee.......hhhhhhhhhhhhh..ee.......hhhhhhhhh....ee....eeeeeeee....ee.hhhhhhh.................hhhhhhhhhhh.....eeeeeehhhhhhh.hhhhhhhh...eee..hhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..ee......eee......eeeeeee...............hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------MULTIHEME_CYTC  PDB: C:10-93 UniProt: 35-118                                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d4c C   3 EVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 570
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562

Chain D from PDB  Type:PROTEIN  Length:570
 aligned with FRDA_SHEON | P83223 from UniProtKB/Swiss-Prot  Length:596

    Alignment length:570
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595
           FRDA_SHEON    26 APEVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 595
               SCOP domains d1d4cd1 D:1-102 Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain                d1d4cd2 D:103-359,D:506-570 Flavocytochrome c3 (respiratory fumarate reductase)                                                                                                                                                                                  d1d4cd3 D:360-505 Flavocytochrome c3 (respiratory fumarate reductase)                                                                             d1d4cd2 D:103-359,D:506-570                                       SCOP domains
               CATH domains 1d4cD01 D:1-102 Flavocytochrome C3; Chain A                                                           1d4cD02 D:103-360,D:508-566  [code=3.50.50.60, no name defined]                                                                                                                                                                                                   1d4cD03 D:361-505 Flavocytochrome C3; Chain A, domain 1                                                                                          --1d4cD02 D:103-360,D:508-566                                ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhh...................hhhhhhhhhhhhhhhhhhhhh..............................hhhhhh......................hhhhhhhhhhh...eeeeeeee..hhhhhhhhhhhhh....eeee........hhhhh...ee...hhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh......eee.........eee.....hhhhhhhhhhhhhhhhh..eee..eeeeee.........eeeeee...eeeeeeeeeeee.......hhhhhhhhhhhhh..ee.......hhhhhhhhhh...ee....eeeeeee.........hhhhhhh.eee............hhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhh...eee.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..................eeeeeeeeeeeee..ee......eee......eeeeeee...............hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------MULTIHEME_CYTC  PDB: D:10-93 UniProt: 35-118                                        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1d4c D   1 APEVLADFHGEMGGCDSCHVSDKGGVTNDNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACHSFGFDMPFGGKWERKFVPVDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 570
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Shewanella oneidensis. Organism_taxid: 70863. Strain: mr1 (1)

1a	1d4cA02	A:103-360,A:508-566
1b	1d4cB02	B:103-360,B:508-566
1c	1d4cC02	C:103-360,C:508-566
1d	1d4cD02	D:103-360,D:508-566

Architecture: Alpha-Beta Complex (3881)

Topology: Flavocytochrome C3; Chain A, domain 1 (40)

Homologous Superfamily: Flavocytochrome C3; Chain A, domain 1 (40)

Shewanella oneidensis. Organism_taxid: 70863. Strain: mr1 (1)

2a	1d4cA03	A:361-505
2b	1d4cB03	B:361-505
2c	1d4cC03	C:361-505
2d	1d4cD03	D:361-505

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Flavocytochrome C3; Chain A, domain 2 (23)

Homologous Superfamily: Flavocytochrome C3; Chain A (23)

Shewanella oneidensis. Organism_taxid: 70863. Strain: mr1 (1)

3a	1d4cB01	B:3-102
3b	1d4cC01	C:3-102
3c	1d4cA01	A:1-102
3d	1d4cD01	D:1-102

(no "Pfam Domain" information available for 1D4C)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (FRDA_SHEON | P83223)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0000104	succinate dehydrogenase activity	Catalysis of the reaction: succinate + acceptor = fumarate + reduced acceptor.
biological process
	GO:0009061	anaerobic respiration	The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which uses compounds other than oxygen (e.g. nitrate, sulfate) as the terminal electron acceptor.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006099	tricarboxylic acid cycle	A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1d4c)

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	1d4c
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	FRDA_SHEON \| P83223
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	1.3.99.1
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	FRDA_SHEON \| P83223
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	FRDA_SHEON \| P83223	:	1d4d 1d4e

1d4c	UNCOMPLEXED FORM
1d4d	SUCCINATE COMPLEXED FORM
1d4e	COMPLEXED WITH FUMARATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 23)

Sites (23, 23)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (3, 12)

CATH Domains (3, 12)

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Gene Ontology (7, 7)

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