1D2E - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP

Authors :   G. R. Andersen, S. Thirup, L. L. Spremulli, J. Nyborg

Date :   23 Sep 99 (Deposition) - 28 Sep 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.94

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   G-Protein, Beta-Barrel, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. R. Andersen, S. Thirup, L. L. Spremulli, J. Nyborg
High Resolution Crystal Structure Of Bovine Mitochondrial Ef-Tu In Complex With Gdp.
J. Mol. Biol. V. 297 421 2000
PubMed-ID: 10715211 | Reference-DOI: 10.1006/JMBI.2000.3564
(for further references see the PDB file header)

Molecule 1 - ELONGATION FACTOR TU (EF-TU)
	Chains	:	A, B, C, D
	Organ	:	LIVER
	Organelle	:	MITOCHONDRIA
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 8)

No.	Name	Count	Type	Full Name
1	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	MG	4	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:71 , GDP A:1301 , HOH A:1685 , HOH A:1686 , HOH A:1687 , HOH A:1688	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	THR B:71 , GDP B:1302 , HOH B:1573 , HOH B:1574 , HOH B:1575 , HOH B:1576	BINDING SITE FOR RESIDUE MG B 502
3	AC3	SOFTWARE	THR C:71 , GDP C:1303 , HOH C:1595 , HOH C:1596 , HOH C:1597 , HOH C:1598	BINDING SITE FOR RESIDUE MG C 503
4	AC4	SOFTWARE	THR D:71 , GDP D:1304 , HOH D:1548 , HOH D:1549	BINDING SITE FOR RESIDUE MG D 504
5	AC5	SOFTWARE	HIS A:65 , ASP A:67 , HIS A:68 , GLY A:69 , LYS A:70 , THR A:71 , THR A:72 , TYR A:92 , ASN A:181 , LYS A:182 , ASP A:184 , SER A:219 , ALA A:220 , LEU A:221 , MG A:501 , HOH A:1324 , HOH A:1335 , HOH A:1336 , HOH A:1353 , HOH A:1380 , HOH A:1417 , HOH A:1523 , HOH A:1686 , HOH A:1688	BINDING SITE FOR RESIDUE GDP A 1301
6	AC6	SOFTWARE	ASP B:67 , HIS B:68 , GLY B:69 , LYS B:70 , THR B:71 , THR B:72 , TYR B:92 , ASN B:181 , LYS B:182 , ASP B:184 , SER B:219 , ALA B:220 , LEU B:221 , MG B:502 , HOH B:1395 , HOH B:1529 , HOH B:1574 , HOH B:1576	BINDING SITE FOR RESIDUE GDP B 1302
7	AC7	SOFTWARE	VAL C:66 , ASP C:67 , HIS C:68 , GLY C:69 , LYS C:70 , THR C:71 , THR C:72 , TYR C:92 , ASN C:181 , LYS C:182 , ASP C:184 , SER C:219 , ALA C:220 , LEU C:221 , MG C:503 , HOH C:1356 , HOH C:1517 , HOH C:1550 , HOH C:1551 , HOH C:1564 , HOH C:1596 , HOH C:1598	BINDING SITE FOR RESIDUE GDP C 1303
8	AC8	SOFTWARE	ASP D:67 , HIS D:68 , GLY D:69 , LYS D:70 , THR D:71 , THR D:72 , TYR D:92 , ASN D:181 , LYS D:182 , ASP D:184 , SER D:219 , ALA D:220 , LEU D:221 , MG D:504 , HOH D:1368 , HOH D:1548	BINDING SITE FOR RESIDUE GDP D 1304

(no "SS Bond" information available for 1D2E)

(no "Cis Peptide Bond" information available for 1D2E)

Asymmetric/Biological Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_EFTU_BOVIN_002 *	Q	355	H	EFTU_BOVIN	---	---	A/B/C/D	Q	355	H
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EFTU_BOVIN	96-111	4	A:96-111 B:96-111 C:96-111 D:96-111

Asymmetric/Biological Unit (9, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000025586	1	ENSBTAE00000208246	chr25:27781218-27781326	109	EFTU_BOVIN	1-15	15	0	-	-
1.2	ENSBTAT00000025586	2	ENSBTAE00000208247	chr25:27781430-27781624	195	EFTU_BOVIN	15-80	66	4	A:55-80 B:55-80 C:55-80 D:55-80	26 26 26 26
1.3	ENSBTAT00000025586	3	ENSBTAE00000208252	chr25:27782369-27782535	167	EFTU_BOVIN	80-135	56	4	A:80-135 B:80-135 C:80-135 D:80-135	56 56 56 56
1.4	ENSBTAT00000025586	4	ENSBTAE00000208254	chr25:27782760-27782864	105	EFTU_BOVIN	136-170	35	4	A:136-170 B:136-170 C:136-170 D:136-170	35 35 35 35
1.5	ENSBTAT00000025586	5	ENSBTAE00000208256	chr25:27782950-27783114	165	EFTU_BOVIN	171-225	55	4	A:171-225 B:171-225 C:171-225 D:171-225	55 55 55 55
1.6	ENSBTAT00000025586	6	ENSBTAE00000208258	chr25:27783243-27783375	133	EFTU_BOVIN	226-270	45	4	A:226-270 B:226-270 C:226-270 D:226-270	45 45 45 45
1.7	ENSBTAT00000025586	7	ENSBTAE00000208260	chr25:27783459-27783563	105	EFTU_BOVIN	270-305	36	4	A:270-305 B:270-305 C:270-305 D:270-305	36 36 36 36
1.8	ENSBTAT00000025586	8	ENSBTAE00000208261	chr25:27783688-27783839	152	EFTU_BOVIN	305-355	51	4	A:305-355 B:305-355 C:305-355 D:305-355	51 51 51 51
1.9	ENSBTAT00000025586	9	ENSBTAE00000208263	chr25:27783927-27784046	120	EFTU_BOVIN	356-395	40	4	A:356-395 B:356-395 C:356-395 D:356-395	40 40 40 40
1.10	ENSBTAT00000025586	10	ENSBTAE00000208265	chr25:27784809-27785173	365	EFTU_BOVIN	396-452	57	4	A:396-451 B:396-451 C:396-451 D:396-451	56 56 56 56

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:397
 aligned with EFTU_BOVIN | P49410 from UniProtKB/Swiss-Prot  Length:452

    Alignment length:397
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       
           EFTU_BOVIN    55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
               SCOP domains d1d2ea3 A:55-250 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                d1d2ea1 A:251-348 Elongation factor Tu (EF-Tu), domain 2                                          d1d2ea2 A:349-451 Elongation factor Tu (EF-Tu)                                                          SCOP domains
               CATH domains 1d2eA01 A:55-250 P-loop containing nucleotide triphosphate hydrolases                                                                                                                               --1d2eA02 A:253-343 Translation factors                                                      ---1d2eA03 A:347-440 Translation factors                                                         ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhh......hhhhhhh..eeee..eeee.eeeeee....eeeeee..hhhhhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhh......hhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....eee...eeeeee..eeeeeeeeeeee..eee.eee...eeeeee...hhhhh....eee.......eeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeee......eeeeee..eeeeeeeeee....hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: A:55-80    -------------------------------------------------------Exon 1.4  PDB: A:136-170           Exon 1.5  PDB: A:171-225 UniProt: 171-225              Exon 1.6  PDB: A:226-270 UniProt: 226-270    ----------------------------------Exon 1.8  PDB: A:305-355 UniProt: 305-355          Exon 1.9  PDB: A:356-395                Exon 1.10  PDB: A:396-451 UniProt: 396-452 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.3  PDB: A:80-135 UniProt: 80-135                 --------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: A:270-305            -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1d2e A  55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444

Chain B from PDB  Type:PROTEIN  Length:397
 aligned with EFTU_BOVIN | P49410 from UniProtKB/Swiss-Prot  Length:452

    Alignment length:397
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       
           EFTU_BOVIN    55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
               SCOP domains d1d2eb3 B:55-250 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                d1d2eb1 B:251-348 Elongation factor Tu (EF-Tu), domain 2                                          d1d2eb2 B:349-451 Elongation factor Tu (EF-Tu)                                                          SCOP domains
               CATH domains 1d2eB01 B:55-250 P-loop containing nucleotide triphosphate hydrolases                                                                                                                               --1d2eB02 B:253-343 Translation factors                                                      ---1d2eB03 B:347-440 Translation factors                                                         ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhh........hhhhhhh..eeee..eeee.eeeeee....eeeeee..hhhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhhhh...eeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhh......hhhhhhhhhhhhhhhh...........eeeeeeeeee...eeeeeee....eee...eeeeee..eeeeeeeeeeee..eee.eee...eeeeee...hhhhh....eee.......eeeeeeeeee..................eeee..eeeeeeee............eeeeeeeeeeee......eeeeee..eeeeeeeeee....hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: B:55-80    -------------------------------------------------------Exon 1.4  PDB: B:136-170           Exon 1.5  PDB: B:171-225 UniProt: 171-225              Exon 1.6  PDB: B:226-270 UniProt: 226-270    ----------------------------------Exon 1.8  PDB: B:305-355 UniProt: 305-355          Exon 1.9  PDB: B:356-395                Exon 1.10  PDB: B:396-451 UniProt: 396-452 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.3  PDB: B:80-135 UniProt: 80-135                 --------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: B:270-305            -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1d2e B  55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444

Chain C from PDB  Type:PROTEIN  Length:397
 aligned with EFTU_BOVIN | P49410 from UniProtKB/Swiss-Prot  Length:452

    Alignment length:397
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       
           EFTU_BOVIN    55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
               SCOP domains d1d2ec3 C:55-250 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                d1d2ec1 C:251-348 Elongation factor Tu (EF-Tu), domain 2                                          d1d2ec2 C:349-451 Elongation factor Tu (EF-Tu)                                                          SCOP domains
               CATH domains 1d2eC01 C:55-250 P-loop containing nucleotide triphosphate hydrolases                                                                                                                               --1d2eC02 C:253-343 Translation factors                                                      ---1d2eC03 C:347-440 Translation factors                                                         ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhh..eeee..eeee.eeeeee....eeeeee..hhhhhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhh...eeeeeeehhhhh.hhhhhhhhhhhhhhhhhhh........eee.hhhhhhh......hhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....eee...eeeeee..eeeeeeeeeeee..eee.eee...eeeeee...hhhhh....eee.......eeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeee......eeeeee..eeeeeeeeee....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: C:55-80    -------------------------------------------------------Exon 1.4  PDB: C:136-170           Exon 1.5  PDB: C:171-225 UniProt: 171-225              Exon 1.6  PDB: C:226-270 UniProt: 226-270    ----------------------------------Exon 1.8  PDB: C:305-355 UniProt: 305-355          Exon 1.9  PDB: C:356-395                Exon 1.10  PDB: C:396-451 UniProt: 396-452 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.3  PDB: C:80-135 UniProt: 80-135                 --------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: C:270-305            -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1d2e C  55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444

Chain D from PDB  Type:PROTEIN  Length:397
 aligned with EFTU_BOVIN | P49410 from UniProtKB/Swiss-Prot  Length:452

    Alignment length:397
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       
           EFTU_BOVIN    55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
               SCOP domains d1d2ed3 D:55-250 Elongation factor Tu (EF-Tu), N-terminal (G) domain                                                                                                                                d1d2ed1 D:251-348 Elongation factor Tu (EF-Tu), domain 2                                          d1d2ed2 D:349-451 Elongation factor Tu (EF-Tu)                                                          SCOP domains
               CATH domains 1d2eD01 D:55-250 P-loop containing nucleotide triphosphate hydrolases                                                                                                                               --1d2eD02 D:253-343 Translation factors                                                      ---1d2eD03 D:347-440 Translation factors                                                         ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhhh.....hhhhhhh..eeee..eeee.eeeeeee..eeeeeee..hhhhhhhhhhhh.....eeeeeee.....hhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhhhh........eee.hhhhhhh......hhhhhhhhhhhhhhhh...........eee..eeeee...eeeeeee....eee...eeeee.....eeeeeeeeee..eee.eee...eeeeee...hhhhh....eee.......eeeeeeeeee.hhhhh............eeee..eeeeeeee............eeeeeeeeeeee......eeeeee..eeeeeeeeee....hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------G_TR_1          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2  PDB: D:55-80    -------------------------------------------------------Exon 1.4  PDB: D:136-170           Exon 1.5  PDB: D:171-225 UniProt: 171-225              Exon 1.6  PDB: D:226-270 UniProt: 226-270    ----------------------------------Exon 1.8  PDB: D:305-355 UniProt: 305-355          Exon 1.9  PDB: D:356-395                Exon 1.10  PDB: D:396-451 UniProt: 396-452 [INCOMPLETE]  Transcript 1 (1)
           Transcript 1 (2) -------------------------Exon 1.3  PDB: D:80-135 UniProt: 80-135                 --------------------------------------------------------------------------------------------------------------------------------------Exon 1.7  PDB: D:270-305            -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1d2e D  55 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPAMTEEDKNIKW 451
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Cattle (Bos taurus) (17)

1a	1d2eA01	A:55-250
1b	1d2eB01	B:55-250
1c	1d2eC01	C:55-250
1d	1d2eD01	D:55-250

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Elongation Factor Tu (Ef-tu); domain 3 (323)

Homologous Superfamily: Translation factors (223)

Cattle (Bos taurus) (2)

2a	1d2eA03	A:347-440
2b	1d2eB03	B:347-440
2c	1d2eC03	C:347-440
2d	1d2eD03	D:347-440
2e	1d2eA02	A:253-343
2f	1d2eB02	B:253-343
2g	1d2eC02	C:253-343
2h	1d2eD02	D:253-343

(no "Pfam Domain" information available for 1D2E)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (EFTU_BOVIN | P49410)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0003746	translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
	GO:0070125	mitochondrial translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis in a mitochondrion.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006414	translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005743	mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0042645	mitochondrial nucleoid	The region of a mitochondrion to which the DNA is confined.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric/Biological Unit
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	1d2e
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	EFTU_BOVIN \| P49410
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	EFTU_BOVIN \| P49410
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UniProtKB/Swiss-Prot
	EFTU_BOVIN \| P49410	:	1xb2

1efc	E. COLI EF-TU IN COMPLEX WITH GDP
1tui	T. AQUATICUS EF-TU IN COMPLEX WITH GDP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (1, 4)

Exons (9, 36)

Sequences/Alignments

Classification and Annotation

SCOP Domains (3, 12)

CATH Domains (2, 12)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File