Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP
Keywords G-PROTEIN, BETA-BARREL, RNA BINDING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1D2E     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ELONGATION FACTOR TU (EF-TU)  A 397 3070 0
2  Protein   ELONGATION FACTOR TU (EF-TU)  B 397 3070 0
3  Protein   ELONGATION FACTOR TU (EF-TU)  C 397 3070 0
4  Protein   ELONGATION FACTOR TU (EF-TU)  D 397 3070 0
5  Ligand   ELONGATION FACTOR TU (EF-TU)  A 2 0 29
6  Ligand   ELONGATION FACTOR TU (EF-TU)  B 2 0 29
7  Ligand   ELONGATION FACTOR TU (EF-TU)  C 2 0 29
8  Ligand   ELONGATION FACTOR TU (EF-TU)  D 2 0 29
9 Water     1201 0 1201
total       2797 12280 1317
Proteins
Unit 1 LYS55 PRO56 HIS57 VAL58 ASN59 VAL60 GLY61 THR62 ILE63 GLY64 HIS65 VAL66 ASP67 HIS68 GLY69 LYS70 THR71 THR72 LEU73 THR74 ALA75 ALA76 ILE77 THR78 LYS79 ILE80 LEU81 ALA82 GLU83 GLY84 GLY85 GLY86 ALA87 LYS88 PHE89 LYS90 LYS91 TYR92 GLU93 GLU94 ILE95 ASP96 ASN97 ALA98 PRO99 GLU100 GLU101 ARG102 ALA103 ARG104 GLY105 ILE106 THR107 ILE108 ASN109 ALA110 ALA111 HIS112 VAL113 GLU114 TYR115 SER116 THR117 ALA118 ALA119 ARG120 HIS121 TYR122 ALA123 HIS124 THR125 ASP126 CYS127 PRO128 GLY129 HIS130 ALA131 ASP132 TYR133 VAL134 LYS135 ASN136 MET137 ILE138 THR139 GLY140 THR141 ALA142 PRO143 LEU144 ASP145 GLY146 CYS147 ILE148 LEU149 VAL150 VAL151 ALA152 ALA153 ASN154 ASP155 GLY156 PRO157 MET158 PRO159 GLN160 THR161 ARG162 GLU163 HIS164 LEU165 LEU166 LEU167 ALA168 ARG169 GLN170 ILE171 GLY172 VAL173 GLU174 HIS175 VAL176 VAL177 VAL178 TYR179 VAL180 ASN181 LYS182 ALA183 ASP184 ALA185 VAL186 GLN187 ASP188 SER189 GLU190 MET191 VAL192 GLU193 LEU194 VAL195 GLU196 LEU197 GLU198 ILE199 ARG200 GLU201 LEU202 LEU203 THR204 GLU205 PHE206 GLY207 TYR208 LYS209 GLY210 GLU211 GLU212 THR213 PRO214 ILE215 ILE216 VAL217 GLY218 SER219 ALA220 LEU221 CYS222 ALA223 LEU224 GLU225 GLN226 ARG227 ASP228 PRO229 GLU230 LEU231 GLY232 LEU233 LYS234 SER235 VAL236 GLN237 LYS238 LEU239 LEU240 ASP241 ALA242 VAL243 ASP244 THR245 TYR246 ILE247 PRO248 VAL249 PRO250 THR251 ARG252 ASP253 LEU254 GLU255 LYS256 PRO257 PHE258 LEU259 LEU260 PRO261 VAL262 GLU263 SER264 VAL265 TYR266 SER267 ILE268 PRO269 GLY270 ARG271 GLY272 THR273 VAL274 VAL275 THR276 GLY277 THR278 LEU279 GLU280 ARG281 GLY282 ILE283 LEU284 LYS285 LYS286 GLY287 ASP288 GLU289 CYS290 GLU291 PHE292 LEU293 GLY294 HIS295 SER296 LYS297 ASN298 ILE299 ARG300 THR301 VAL302 VAL303 THR304 GLY305 ILE306 GLU307 MET308 PHE309 HIS310 LYS311 SER312 LEU313 ASP314 ARG315 ALA316 GLU317 ALA318 GLY319 ASP320 ASN321 LEU322 GLY323 ALA324 LEU325 VAL326 ARG327 GLY328 LEU329 LYS330 ARG331 GLU332 ASP333 LEU334 ARG335 ARG336 GLY337 LEU338 VAL339 MET340 ALA341 LYS342 PRO343 GLY344 SER345 ILE346 GLN347 PRO348 HIS349 GLN350 LYS351 VAL352 GLU353 ALA354 GLN355 VAL356 TYR357 ILE358 LEU359 THR360 LYS361 GLU362 GLU363 GLY364 GLY365 ARG366 HIS367 LYS368 PRO369 PHE370 VAL371 SER372 HIS373 PHE374 MET375 PRO376 VAL377 MET378 PHE379 SER380 LEU381 THR382 TRP383 ASP384 MET385 ALA386 CYS387 ARG388 ILE389 ILE390 LEU391 PRO392 PRO393 GLY394 LYS395 GLU396 LEU397 ALA398 MET399 PRO400 GLY401 GLU402 ASP403 LEU404 LYS405 LEU406 THR407 LEU408 ILE409 LEU410 ARG411 GLN412 PRO413 MET414 ILE415 LEU416 GLU417 LYS418 GLY419 GLN420 ARG421 PHE422 THR423 LEU424 ARG425 ASP426 GLY427 ASN428 ARG429 THR430 ILE431 GLY432 THR433 GLY434 LEU435 VAL436 THR437 ASP438 THR439 PRO440 ALA441 MET442 THR443 GLU444 GLU445 ASP446 LYS447 ASN448 ILE449 LYS450 TRP451
Unit 2 LYS55 PRO56 HIS57 VAL58 ASN59 VAL60 GLY61 THR62 ILE63 GLY64 HIS65 VAL66 ASP67 HIS68 GLY69 LYS70 THR71 THR72 LEU73 THR74 ALA75 ALA76 ILE77 THR78 LYS79 ILE80 LEU81 ALA82 GLU83 GLY84 GLY85 GLY86 ALA87 LYS88 PHE89 LYS90 LYS91 TYR92 GLU93 GLU94 ILE95 ASP96 ASN97 ALA98 PRO99 GLU100 GLU101 ARG102 ALA103 ARG104 GLY105 ILE106 THR107 ILE108 ASN109 ALA110 ALA111 HIS112 VAL113 GLU114 TYR115 SER116 THR117 ALA118 ALA119 ARG120 HIS121 TYR122 ALA123 HIS124 THR125 ASP126 CYS127 PRO128 GLY129 HIS130 ALA131 ASP132 TYR133 VAL134 LYS135 ASN136 MET137 ILE138 THR139 GLY140 THR141 ALA142 PRO143 LEU144 ASP145 GLY146 CYS147 ILE148 LEU149 VAL150 VAL151 ALA152 ALA153 ASN154 ASP155 GLY156 PRO157 MET158 PRO159 GLN160 THR161 ARG162 GLU163 HIS164 LEU165 LEU166 LEU167 ALA168 ARG169 GLN170 ILE171 GLY172 VAL173 GLU174 HIS175 VAL176 VAL177 VAL178 TYR179 VAL180 ASN181 LYS182 ALA183 ASP184 ALA185 VAL186 GLN187 ASP188 SER189 GLU190 MET191 VAL192 GLU193 LEU194 VAL195 GLU196 LEU197 GLU198 ILE199 ARG200 GLU201 LEU202 LEU203 THR204 GLU205 PHE206 GLY207 TYR208 LYS209 GLY210 GLU211 GLU212 THR213 PRO214 ILE215 ILE216 VAL217 GLY218 SER219 ALA220 LEU221 CYS222 ALA223 LEU224 GLU225 GLN226 ARG227 ASP228 PRO229 GLU230 LEU231 GLY232 LEU233 LYS234 SER235 VAL236 GLN237 LYS238 LEU239 LEU240 ASP241 ALA242 VAL243 ASP244 THR245 TYR246 ILE247 PRO248 VAL249 PRO250 THR251 ARG252 ASP253 LEU254 GLU255 LYS256 PRO257 PHE258 LEU259 LEU260 PRO261 VAL262 GLU263 SER264 VAL265 TYR266 SER267 ILE268 PRO269 GLY270 ARG271 GLY272 THR273 VAL274 VAL275 THR276 GLY277 THR278 LEU279 GLU280 ARG281 GLY282 ILE283 LEU284 LYS285 LYS286 GLY287 ASP288 GLU289 CYS290 GLU291 PHE292 LEU293 GLY294 HIS295 SER296 LYS297 ASN298 ILE299 ARG300 THR301 VAL302 VAL303 THR304 GLY305 ILE306 GLU307 MET308 PHE309 HIS310 LYS311 SER312 LEU313 ASP314 ARG315 ALA316 GLU317 ALA318 GLY319 ASP320 ASN321 LEU322 GLY323 ALA324 LEU325 VAL326 ARG327 GLY328 LEU329 LYS330 ARG331 GLU332 ASP333 LEU334 ARG335 ARG336 GLY337 LEU338 VAL339 MET340 ALA341 LYS342 PRO343 GLY344 SER345 ILE346 GLN347 PRO348 HIS349 GLN350 LYS351 VAL352 GLU353 ALA354 GLN355 VAL356 TYR357 ILE358 LEU359 THR360 LYS361 GLU362 GLU363 GLY364 GLY365 ARG366 HIS367 LYS368 PRO369 PHE370 VAL371 SER372 HIS373 PHE374 MET375 PRO376 VAL377 MET378 PHE379 SER380 LEU381 THR382 TRP383 ASP384 MET385 ALA386 CYS387 ARG388 ILE389 ILE390 LEU391 PRO392 PRO393 GLY394 LYS395 GLU396 LEU397 ALA398 MET399 PRO400 GLY401 GLU402 ASP403 LEU404 LYS405 LEU406 THR407 LEU408 ILE409 LEU410 ARG411 GLN412 PRO413 MET414 ILE415 LEU416 GLU417 LYS418 GLY419 GLN420 ARG421 PHE422 THR423 LEU424 ARG425 ASP426 GLY427 ASN428 ARG429 THR430 ILE431 GLY432 THR433 GLY434 LEU435 VAL436 THR437 ASP438 THR439 PRO440 ALA441 MET442 THR443 GLU444 GLU445 ASP446 LYS447 ASN448 ILE449 LYS450 TRP451
Unit 3 LYS55 PRO56 HIS57 VAL58 ASN59 VAL60 GLY61 THR62 ILE63 GLY64 HIS65 VAL66 ASP67 HIS68 GLY69 LYS70 THR71 THR72 LEU73 THR74 ALA75 ALA76 ILE77 THR78 LYS79 ILE80 LEU81 ALA82 GLU83 GLY84 GLY85 GLY86 ALA87 LYS88 PHE89 LYS90 LYS91 TYR92 GLU93 GLU94 ILE95 ASP96 ASN97 ALA98 PRO99 GLU100 GLU101 ARG102 ALA103 ARG104 GLY105 ILE106 THR107 ILE108 ASN109 ALA110 ALA111 HIS112 VAL113 GLU114 TYR115 SER116 THR117 ALA118 ALA119 ARG120 HIS121 TYR122 ALA123 HIS124 THR125 ASP126 CYS127 PRO128 GLY129 HIS130 ALA131 ASP132 TYR133 VAL134 LYS135 ASN136 MET137 ILE138 THR139 GLY140 THR141 ALA142 PRO143 LEU144 ASP145 GLY146 CYS147 ILE148 LEU149 VAL150 VAL151 ALA152 ALA153 ASN154 ASP155 GLY156 PRO157 MET158 PRO159 GLN160 THR161 ARG162 GLU163 HIS164 LEU165 LEU166 LEU167 ALA168 ARG169 GLN170 ILE171 GLY172 VAL173 GLU174 HIS175 VAL176 VAL177 VAL178 TYR179 VAL180 ASN181 LYS182 ALA183 ASP184 ALA185 VAL186 GLN187 ASP188 SER189 GLU190 MET191 VAL192 GLU193 LEU194 VAL195 GLU196 LEU197 GLU198 ILE199 ARG200 GLU201 LEU202 LEU203 THR204 GLU205 PHE206 GLY207 TYR208 LYS209 GLY210 GLU211 GLU212 THR213 PRO214 ILE215 ILE216 VAL217 GLY218 SER219 ALA220 LEU221 CYS222 ALA223 LEU224 GLU225 GLN226 ARG227 ASP228 PRO229 GLU230 LEU231 GLY232 LEU233 LYS234 SER235 VAL236 GLN237 LYS238 LEU239 LEU240 ASP241 ALA242 VAL243 ASP244 THR245 TYR246 ILE247 PRO248 VAL249 PRO250 THR251 ARG252 ASP253 LEU254 GLU255 LYS256 PRO257 PHE258 LEU259 LEU260 PRO261 VAL262 GLU263 SER264 VAL265 TYR266 SER267 ILE268 PRO269 GLY270 ARG271 GLY272 THR273 VAL274 VAL275 THR276 GLY277 THR278 LEU279 GLU280 ARG281 GLY282 ILE283 LEU284 LYS285 LYS286 GLY287 ASP288 GLU289 CYS290 GLU291 PHE292 LEU293 GLY294 HIS295 SER296 LYS297 ASN298 ILE299 ARG300 THR301 VAL302 VAL303 THR304 GLY305 ILE306 GLU307 MET308 PHE309 HIS310 LYS311 SER312 LEU313 ASP314 ARG315 ALA316 GLU317 ALA318 GLY319 ASP320 ASN321 LEU322 GLY323 ALA324 LEU325 VAL326 ARG327 GLY328 LEU329 LYS330 ARG331 GLU332 ASP333 LEU334 ARG335 ARG336 GLY337 LEU338 VAL339 MET340 ALA341 LYS342 PRO343 GLY344 SER345 ILE346 GLN347 PRO348 HIS349 GLN350 LYS351 VAL352 GLU353 ALA354 GLN355 VAL356 TYR357 ILE358 LEU359 THR360 LYS361 GLU362 GLU363 GLY364 GLY365 ARG366 HIS367 LYS368 PRO369 PHE370 VAL371 SER372 HIS373 PHE374 MET375 PRO376 VAL377 MET378 PHE379 SER380 LEU381 THR382 TRP383 ASP384 MET385 ALA386 CYS387 ARG388 ILE389 ILE390 LEU391 PRO392 PRO393 GLY394 LYS395 GLU396 LEU397 ALA398 MET399 PRO400 GLY401 GLU402 ASP403 LEU404 LYS405 LEU406 THR407 LEU408 ILE409 LEU410 ARG411 GLN412 PRO413 MET414 ILE415 LEU416 GLU417 LYS418 GLY419 GLN420 ARG421 PHE422 THR423 LEU424 ARG425 ASP426 GLY427 ASN428 ARG429 THR430 ILE431 GLY432 THR433 GLY434 LEU435 VAL436 THR437 ASP438 THR439 PRO440 ALA441 MET442 THR443 GLU444 GLU445 ASP446 LYS447 ASN448 ILE449 LYS450 TRP451
Unit 4 LYS55 PRO56 HIS57 VAL58 ASN59 VAL60 GLY61 THR62 ILE63 GLY64 HIS65 VAL66 ASP67 HIS68 GLY69 LYS70 THR71 THR72 LEU73 THR74 ALA75 ALA76 ILE77 THR78 LYS79 ILE80 LEU81 ALA82 GLU83 GLY84 GLY85 GLY86 ALA87 LYS88 PHE89 LYS90 LYS91 TYR92 GLU93 GLU94 ILE95 ASP96 ASN97 ALA98 PRO99 GLU100 GLU101 ARG102 ALA103 ARG104 GLY105 ILE106 THR107 ILE108 ASN109 ALA110 ALA111 HIS112 VAL113 GLU114 TYR115 SER116 THR117 ALA118 ALA119 ARG120 HIS121 TYR122 ALA123 HIS124 THR125 ASP126 CYS127 PRO128 GLY129 HIS130 ALA131 ASP132 TYR133 VAL134 LYS135 ASN136 MET137 ILE138 THR139 GLY140 THR141 ALA142 PRO143 LEU144 ASP145 GLY146 CYS147 ILE148 LEU149 VAL150 VAL151 ALA152 ALA153 ASN154 ASP155 GLY156 PRO157 MET158 PRO159 GLN160 THR161 ARG162 GLU163 HIS164 LEU165 LEU166 LEU167 ALA168 ARG169 GLN170 ILE171 GLY172 VAL173 GLU174 HIS175 VAL176 VAL177 VAL178 TYR179 VAL180 ASN181 LYS182 ALA183 ASP184 ALA185 VAL186 GLN187 ASP188 SER189 GLU190 MET191 VAL192 GLU193 LEU194 VAL195 GLU196 LEU197 GLU198 ILE199 ARG200 GLU201 LEU202 LEU203 THR204 GLU205 PHE206 GLY207 TYR208 LYS209 GLY210 GLU211 GLU212 THR213 PRO214 ILE215 ILE216 VAL217 GLY218 SER219 ALA220 LEU221 CYS222 ALA223 LEU224 GLU225 GLN226 ARG227 ASP228 PRO229 GLU230 LEU231 GLY232 LEU233 LYS234 SER235 VAL236 GLN237 LYS238 LEU239 LEU240 ASP241 ALA242 VAL243 ASP244 THR245 TYR246 ILE247 PRO248 VAL249 PRO250 THR251 ARG252 ASP253 LEU254 GLU255 LYS256 PRO257 PHE258 LEU259 LEU260 PRO261 VAL262 GLU263 SER264 VAL265 TYR266 SER267 ILE268 PRO269 GLY270 ARG271 GLY272 THR273 VAL274 VAL275 THR276 GLY277 THR278 LEU279 GLU280 ARG281 GLY282 ILE283 LEU284 LYS285 LYS286 GLY287 ASP288 GLU289 CYS290 GLU291 PHE292 LEU293 GLY294 HIS295 SER296 LYS297 ASN298 ILE299 ARG300 THR301 VAL302 VAL303 THR304 GLY305 ILE306 GLU307 MET308 PHE309 HIS310 LYS311 SER312 LEU313 ASP314 ARG315 ALA316 GLU317 ALA318 GLY319 ASP320 ASN321 LEU322 GLY323 ALA324 LEU325 VAL326 ARG327 GLY328 LEU329 LYS330 ARG331 GLU332 ASP333 LEU334 ARG335 ARG336 GLY337 LEU338 VAL339 MET340 ALA341 LYS342 PRO343 GLY344 SER345 ILE346 GLN347 PRO348 HIS349 GLN350 LYS351 VAL352 GLU353 ALA354 GLN355 VAL356 TYR357 ILE358 LEU359 THR360 LYS361 GLU362 GLU363 GLY364 GLY365 ARG366 HIS367 LYS368 PRO369 PHE370 VAL371 SER372 HIS373 PHE374 MET375 PRO376 VAL377 MET378 PHE379 SER380 LEU381 THR382 TRP383 ASP384 MET385 ALA386 CYS387 ARG388 ILE389 ILE390 LEU391 PRO392 PRO393 GLY394 LYS395 GLU396 LEU397 ALA398 MET399 PRO400 GLY401 GLU402 ASP403 LEU404 LYS405 LEU406 THR407 LEU408 ILE409 LEU410 ARG411 GLN412 PRO413 MET414 ILE415 LEU416 GLU417 LYS418 GLY419 GLN420 ARG421 PHE422 THR423 LEU424 ARG425 ASP426 GLY427 ASN428 ARG429 THR430 ILE431 GLY432 THR433 GLY434 LEU435 VAL436 THR437 ASP438 THR439 PRO440 ALA441 MET442 THR443 GLU444 GLU445 ASP446 LYS447 ASN448 ILE449 LYS450 TRP451
Ligands
Unit 5 MG501 GDP1301
Unit 6 MG502 GDP1302
Unit 7 MG503 GDP1303
Unit 8 MG504 GDP1304
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany