Chain A from PDB Type:PROTEIN Length:250
aligned with TOP1_ECOLI | P06612 from UniProtKB/Swiss-Prot Length:865
Alignment length:255
227 237 247 257 267 277 287 297 307 317 327 337 347 357 367 377 387 397 407 417 427 437 447 457 467
TOP1_ECOLI 218 EFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTK 472
SCOP domains d1cyya_ A: DNA topoisomerase I, 67K N-terminal domain SCOP domains
CATH domains 1cyyA02 A:218-279,A:405-472 Topoisomerase I, domain 3 1cyyA01 A:280-404 Topoisomerase I, domain 4 1cyyA02 A:218-279,A:405-472 Topoisome rase I, domain 3 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author eeeeeeeeee.....eeeeeeeee..ee....hhhhhhhhhhhhhhh.eeeeeeeeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...........................hhhhh...hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeeeehhhhhh....-----...........eeeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------TOPOISOMERASE_I----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1cyy A 218 EFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPAL-----DRILPAVNKGDALTLVELTPAQHFTK 472
227 237 247 257 267 277 287 297 307 317 327 337 347 357 367 377 387 397 407 417 427 437 | 447 457 467
441 447
Chain B from PDB Type:PROTEIN Length:251
aligned with TOP1_ECOLI | P06612 from UniProtKB/Swiss-Prot Length:865
Alignment length:261
223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473
TOP1_ECOLI 214 FVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPP 474
SCOP domains d1cyyb_ B: DNA topoisomerase I, 67K N-terminal domain SCOP domains
CATH domains ----1cyyB02 B:218-279,B:405-471 Topoisomerase I, domain 3 1cyyB01 B:280-404 Topoisomerase I, domain 4 1cyyB02 B:218-279,B:405-471 Topoisome rase I, domain 3 --- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeeee.....eeeeeeeee..ee....hhhhhhhhhhhhhh..eeeeeeeeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.........-----.............hhhhh...hhhhhhhhhhhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeeeehhhhhh....-----...........eeeeeeeeeeeee.... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------TOPOISOMERASE_I------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1cyy B 214 FVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYAS-----EAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPAL-----DRILPAVNKGDALTLVELTPAQHFTKPP 474
223 233 243 253 263 273 283 293 303 313 323 333 343 353 | 363 373 383 393 403 413 423 433 | - | 453 463 473
357 363 441 447
Legend: |
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(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |