Chain A from PDB Type:PROTEIN Length:245
aligned with TOP1_ECOLI | P06612 from UniProtKB/Swiss-Prot Length:865
Alignment length:260
223 233 243 253 263 273 283 293 303 313 323 333 343 353 363 373 383 393 403 413 423 433 443 453 463 473
TOP1_ECOLI 214 FVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKP 473
SCOP domains d1cy9a_ A: DNA topoisomerase I, 67K N-terminal domain SCOP domains
CATH domains ----1cy9A02 A:218-279,A:405-471 Topoisomerase I, domain 3 1cy9A01 A:280-404 Topoisomerase I, domain 4 1cy9A02 A:218-279,A:405-471 Topois omerase I, domain 3 -- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeeee.....eeeeeeeee..ee....hhhhhhhhhhhhhhh.eeeeeeeeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.........-------...........hhhhh...hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeeeehhhhhh.--------...........eeeeeeeeeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------TOPOISOMERASE_I------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1cy9 A 214 FVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYAS-------HEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVM--------DRILPAVNKGDALTLVELTPAQHFTKP 473
223 233 243 253 263 273 283 293 303 313 323 333 343 353 | - | 373 383 393 403 413 423 433 | - | 453 463 473
357 365 438 447
Chain B from PDB Type:PROTEIN Length:243
aligned with TOP1_ECOLI | P06612 from UniProtKB/Swiss-Prot Length:865
Alignment length:257
225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405 415 425 435 445 455 465
TOP1_ECOLI 216 PEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTK 472
SCOP domains d1cy9b_ B: DNA topoisomerase I, 67K N-terminal domain SCOP domains
CATH domains --1cy9B02 B:218-279,B:405-470 Topoisomerase I, domain 3 1cy9B01 B:280-404 Topoisomerase I, domain 4 1cy9B02 B:218-279,B:405-470 Topoiso merase I, domain 3 -- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeee.....eeeeeeeee..ee....hhhhhhhhhhhhhhh.eeeeeeeeeeeee......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.........-------...........hhhhh...hhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeeeehhhhhh..-------...........eeeeeeeeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------TOPOISOMERASE_I----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1cy9 B 216 PEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYAS-------HEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMP-------DRILPAVNKGDALTLVELTPAQHFTK 472
225 235 245 255 265 275 285 295 305 315 325 335 345 355 | 365 375 385 395 405 415 425 435 | - | 455 465
357 365 439 447
Legend: |
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→ Mismatch |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |