1CWV - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF INVASIN: A BACTERIAL INTEGRIN-BINDING PROTEIN

Authors :   P. J. Bjorkman, Z. A. Hamburger

Date :   26 Aug 99 (Deposition) - 13 Oct 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A

Keywords :   Integrin-Binding Protein, Inv Gene, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. A. Hamburger, M. S. Brown, R. R. Isberg, P. J. Bjorkman
Crystal Structure Of Invasin: A Bacterial Integrin-Binding Protein.
Science V. 286 291 1999
PubMed-ID: 10514372 | Reference-DOI: 10.1126/SCIENCE.286.5438.291

Molecule 1 - INVASIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	C-TERMINAL EXTRACELLULAR FRAGMENT
	Organism Scientific	:	YERSINIA PSEUDOTUBERCULOSIS
	Organism Taxid	:	633

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:121 , THR A:504 , LEU A:505 , THR A:506 , GLN A:585 , ARG A:586 , GLN A:587 , ASN A:744 , THR A:775 , ILE A:782 , SER A:784	BINDING SITE FOR RESIDUE CIT A 994

Asymmetric/Biological Unit

No.	Residues
1	A:907	-	A:982

Asymmetric/Biological Unit

No.	Residues
1	Leu A:550	-	Pro A:551
2	Val A:608	-	Pro A:609
3	Phe A:814	-	Pro A:815
4	Thr A:845	-	Pro A:846

(no "SAP(SNP)/Variant" information available for 1CWV)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	BIG1	PS51127	Big-1 (bacterial Ig-like domain 1) domain profile.	INVA_YERPS	503-596 601-691	2	A:504-597 A:602-692

(no "Exon" information available for 1CWV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:484
 aligned with INVA_YERPS | P11922 from UniProtKB/Swiss-Prot  Length:985

    Alignment length:484
                                   511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981    
           INVA_YERPS   502 LTLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITPQVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTSLVSSLEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKKTSTDFETMNMDTGALVQGPAYLAFPLCALAI 985
               SCOP domains d1cwva1 A:503-596 Invasin                                                                     d1cwva2 A:597-692 Invasin                                                                       d1cwva3 A:693-795 Invasin                                                                              d1cwva4 A:796-886 Invasin                                                                  d1cwva5 A:887-986 Invasin                                                                            SCOP domains
               CATH domains 1cwvA01 A:503-595  [code=2.60.40.920, no name defined]                                       1cwvA02 A:596-692  [code=2.60.40.920, no name defined]                                           1cwvA03 A:693-794  [code=2.60.40.920, no name defined]                                                -1cwvA04 A:796-886  [code=2.60.40.1080, no name defined]                                    1cwvA05 A:887-986 Mannose-Binding Protein A, subunit A                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...ee......eeeeeeee..........eeeee........eeeee.....eeeeee.....eeeeeeeee..eeeeeeeeee....hhhhheeeee..eee......eeeeee.............eeeee...ee...ee....eeeeeee....eeeeeeeee..eeeeeeeeeeeee..........eeee...eee......eeeeee..............eeeeeee...ee...ee....eeeeee....eeeeeeeee..ee.hhhheeeeee....eeeeee..eee........eee...eeeeee..hhhhhh.eeeee.....eee....eeee.......eeeeeee......eeeeee...eeeee......hhhhhhhhh.....eee.hhhhhh........hhhhhhhhhhhh.......eeeee.....eeeee.....ee.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -BIG1  PDB: A:504-597 UniProt: 503-596                                                         ----BIG1  PDB: A:602-692 UniProt: 601-691                                                      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cwv A 503 LTLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNSVGDVTITPQVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGRSLVSSLEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKKTSTDFETMNMDTGALQPGPAYLAFPLCALSI 986
                                   512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1CWV)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (INVA_YERPS | P11922)

biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.

Asymmetric/Biological Unit
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		Leu A:550 - Pro A:551	[ RasMol ]
		Phe A:814 - Pro A:815	[ RasMol ]
		Thr A:845 - Pro A:846	[ RasMol ]
		Val A:608 - Pro A:609	[ RasMol ]

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	1cwv
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	INVA_YERPS \| P11922	:	4e1t

(no "Related Entries Specified in the PDB File" available for 1CWV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

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