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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF THE TRANSMEMBRANE BETA-DOMAIN FROM INVASIN FROM YERSINIA PSEUDOTUBERCULOSIS
 
Authors :  J. W. Fairman, N. Dautin, D. Wojtowicz, L. Wei, N. Noinaj, T. J. Barnard, A. Finkelstein, T. M. Przytycka, V. Cherezov, S. K. Buchanan
Date :  07 Mar 12  (Deposition) - 13 Jun 12  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym./Biol. Unit :  A
Keywords :  Outer Membrane Beta Barrel, Adhesin, Integrin, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. W. Fairman, N. Dautin, D. Wojtowicz, W. Liu, N. Noinaj, T. J. Barnard E. Udho, T. M. Przytycka, V. Cherezov, S. K. Buchanan
Crystal Structures Of The Outer Membrane Domain Of Intimin And Invasin From Enterohemorrhagic E. Coli And Enteropathogenic Y. Pseudotuberculosis.
Structure V. 20 1233 2012
PubMed-ID: 22658748  |  Reference-DOI: 10.1016/J.STR.2012.04.011

(-) Compounds

Molecule 1 - INVASIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: TRANSMEMBRANE DOMAIN (UNP RESIDUES 147-390)
    Gene: INVASIN, YPTB1668
    Mutation: YES
    Organism Scientific: YERSINIA PSEUDOTUBERCULOSIS
    Organism Taxid: 633

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1OLB1Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
2OLC12Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:221 , HIS A:226 , HIS A:228 , ARG A:250 , TYR A:320 , OLC A:402 , HOH A:524 , HOH A:564BINDING SITE FOR RESIDUE OLC A 401
02AC2SOFTWARELEU A:200 , THR A:217 , PHE A:218 , TYR A:219 , LEU A:232 , ARG A:250 , OLC A:401 , OLC A:409 , OLC A:411BINDING SITE FOR RESIDUE OLC A 402
03AC3SOFTWARETRP A:211 , TYR A:213 , OLB A:405BINDING SITE FOR RESIDUE OLC A 403
04AC4SOFTWARELYS A:160 , TRP A:175 , LEU A:215 , LEU A:232 , OLB A:405 , OLC A:409 , OLC A:411BINDING SITE FOR RESIDUE OLC A 404
05AC5SOFTWARETHR A:206 , GLY A:214 , LEU A:215 , OLC A:403 , OLC A:404 , HOH A:561BINDING SITE FOR RESIDUE OLB A 405
06AC6SOFTWARELEU A:169 , ILE A:189 , THR A:238 , ASP A:239 , ILE A:318BINDING SITE FOR RESIDUE OLC A 406
07AC7SOFTWAREALA A:316 , ILE A:318 , VAL A:330 , GLN A:332BINDING SITE FOR RESIDUE OLC A 407
08AC8SOFTWAREVAL A:154 , TYR A:312 , GLY A:335 , MET A:348 , TYR A:350 , PHE A:356 , HOH A:576BINDING SITE FOR RESIDUE OLC A 408
09AC9SOFTWAREPHE A:149 , TRP A:171 , ALA A:173 , PRO A:174 , TRP A:175 , SER A:185 , GLY A:203 , THR A:217 , TRP A:344 , OLC A:402 , OLC A:404BINDING SITE FOR RESIDUE OLC A 409
10BC1SOFTWAREVAL A:154 , LEU A:164 , LYS A:165 , SER A:167 , ASN A:191 , ASN A:196 , OLC A:413 , HOH A:530BINDING SITE FOR RESIDUE OLC A 410
11BC2SOFTWAREPHE A:249 , ARG A:250 , TRP A:254 , ARG A:266 , TYR A:320 , GLN A:390 , OLC A:402 , OLC A:404 , OLC A:412BINDING SITE FOR RESIDUE OLC A 411
12BC3SOFTWARELEU A:232 , ALA A:234 , ALA A:245 , ASN A:246 , GLY A:247 , LEU A:273 , OLC A:411BINDING SITE FOR RESIDUE OLC A 412
13BC4SOFTWAREASN A:191 , SER A:194 , ASN A:196 , OLC A:410BINDING SITE FOR RESIDUE OLC A 413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E1T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E1T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E1T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E1T)

(-) Exons   (0, 0)

(no "Exon" information available for 4E1T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:245
 aligned with INVA_YERPS | P11922 from UniProtKB/Swiss-Prot  Length:985

    Alignment length:245
                                   155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385     
           INVA_YERPS   146 LNRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNIVLEYQ 390
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.....eeeeeeeeeeeeee...eeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeee....ee.......eeee..eeeeeeeeee..eeeeeeeeeeeee.................eeeeeeeeeeee..eeeeeeeee.hhh.eeeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh...........eeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e1t A 146 MNRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTGHNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRFGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNIVLEYQ 390
                                   155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E1T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E1T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E1T)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (INVA_YERPS | P11922)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.

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  4e1t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INVA_YERPS | P11922: 1cwv

(-) Related Entries Specified in the PDB File

4e1s INTIMIN BETA-DOMAIN