1CDP - JenaLib

Title :   RESTRAINED LEAST SQUARES REFINEMENT OF NATIVE (CALCIUM) AND CADMIUM-SUBSTITUTED CARP PARVALBUMIN USING X-RAY CRYSTALLOGRAPHIC DATA AT 1.6-ANGSTROMS RESOLUTION

Authors :   A. L. Swain, R. H. Kretsinger, E. L. Amma

Date :   24 Jan 90 (Deposition) - 15 Oct 90 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Calcium Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. L. Swain, R. H. Kretsinger, E. L. Amma
Restrained Least Squares Refinement Of Native (Calcium) And Cadmium-Substituted Carp Parvalbumin Using X-Ray Crystallographic Data At 1. 6-A Resolution.
J. Biol. Chem. V. 264 16620 1989
PubMed-ID: 2777802
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:90 , ASP A:92 , ASP A:94 , LYS A:96 , GLU A:101 , HOH A:116	BINDING SITE FOR RESIDUE CD A 109
2	AC2	SOFTWARE	ASP A:51 , ASP A:53 , SER A:55 , PHE A:57 , GLU A:59 , GLU A:62	BINDING SITE FOR RESIDUE CD A 110
3	CD	UNKNOWN	ASP A:51 , GLN A:52 , ASP A:53 , LYS A:54 , SER A:55 , GLY A:56 , PHE A:57 , ILE A:58 , GLU A:59 , GLU A:60 , ASP A:61 , GLU A:62	NULL
4	EF	UNKNOWN	ASP A:90 , SER A:91 , ASP A:92 , GLY A:93 , ASP A:94 , GLY A:95 , LYS A:96 , ILE A:97 , GLY A:98 , VAL A:99 , ASP A:100 , GLU A:101	NULL

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVB_CYPCA	38-73 77-108	2	A:38-73 A:77-108
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVB_CYPCA	51-63 90-102	2	A:51-63 A:90-102

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EF_HAND_2	PS50222	EF-hand calcium-binding domain profile.	PRVB_CYPCA	38-73 77-108	4	A:38-73 A:77-108
2	EF_HAND_1	PS00018	EF-hand calcium-binding domain.	PRVB_CYPCA	51-63 90-102	4	A:51-63 A:90-102

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:109
 aligned with PRVB_CYPCA | P02618 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:109
                             1                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99         
           PRVB_CYPCA     - -AFAGVLNDADIAAALEACKAADSFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDEFTALVKA 108
               SCOP domains d1cdpa_ A: Parvalbumin                                                                                        SCOP domains
               CATH domains -1cdpA00 A:1-108 EF-hand                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh........hhhhhhhh......hhhhhhhhhhh......eeehhhhhhhhhhh........hhhhhhhhhhh.....eee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------EF_HAND_2  PDB: A:38-73             ---EF_HAND_2  PDB: A:77-108         PROSITE (1)
                PROSITE (2) ---------------------------------------------------EF_HAND_1    --------------------------EF_HAND_1    ------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 1cdp A   0 xAFAGVLNDADIAAALEACKAADSFNHKAFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELKLFLQNFKADARALTDGETKTFLKAGDSDGDGKIGVDEFTALVKA 108
                            |        9        19        29        39        49        59        69        79        89        99         
                            |                                                                                                            
                            0-ACE

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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Biological Unit
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