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1BXN
Asym. Unit
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Asym.Unit (343 KB)
Biol.Unit 1 (666 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS.
Authors
:
S. Hansen, V. B. Vollan, E. Hough, K. Andersen
Date
:
06 Oct 98 (Deposition) - 06 Oct 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,C,E,G,I,J,K,L
Biol. Unit 1: A,C,E,G,I,J,K,L (2x)
Keywords
:
Lyase (Carbon-Carbon), Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hansen, V. B. Vollan, E. Hough, K. Andersen
The Crystal Structure Of Rubisco From Alcaligenes Eutrophus Reveals A Novel Central Eight-Stranded Beta-Barrel Formed B Beta-Strands From Four Subunits.
J. Mol. Biol. V. 288 609 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PO4
8
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:297 , HIS A:329 , GLU A:338 , SER A:381 , ASN E:126
BINDING SITE FOR RESIDUE PO4 A 501
2
AC2
SOFTWARE
GLY A:382 , GLY A:405 , GLY A:406 , THR E:68 , TRP E:69
BINDING SITE FOR RESIDUE PO4 A 502
3
AC3
SOFTWARE
ARG C:297 , HIS C:329 , GLU C:338 , SER C:381
BINDING SITE FOR RESIDUE PO4 C 503
4
AC4
SOFTWARE
THR C:68 , TRP C:69 , GLY C:382 , GLY C:383 , GLY C:405 , GLY C:406
BINDING SITE FOR RESIDUE PO4 C 504
5
AC5
SOFTWARE
ARG E:297 , HIS E:329 , GLU E:338 , SER E:381
BINDING SITE FOR RESIDUE PO4 E 505
6
AC6
SOFTWARE
THR A:68 , TRP A:69 , GLY E:382 , GLY E:405 , GLY E:406
BINDING SITE FOR RESIDUE PO4 E 506
7
AC7
SOFTWARE
ARG G:297 , HIS G:329 , GLU G:338 , SER G:381
BINDING SITE FOR RESIDUE PO4 G 507
8
AC8
SOFTWARE
THR G:68 , TRP G:69 , GLY G:405 , GLY G:406
BINDING SITE FOR RESIDUE PO4 G 508
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:199-207,C:199-207,E:199-207,G:19...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL1C_CUPNE
199-207
4
A:199-207
C:199-207
E:199-207
G:199-207
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1bxna2 (A:22-150)
1b: SCOP_d1bxnc2 (C:22-150)
1c: SCOP_d1bxne2 (E:22-150)
1d: SCOP_d1bxng2 (G:22-150)
2a: SCOP_d1bxni_ (I:)
2b: SCOP_d1bxnj_ (J:)
2c: SCOP_d1bxnk_ (K:)
2d: SCOP_d1bxnl_ (L:)
3a: SCOP_d1bxna1 (A:151-467)
3b: SCOP_d1bxnc1 (C:151-467)
3c: SCOP_d1bxne1 (E:151-467)
3d: SCOP_d1bxng1 (G:151-467)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Alcaligenes eutrophus [TaxId: 106590]
(1)
1a
d1bxna2
A:22-150
1b
d1bxnc2
C:22-150
1c
d1bxne2
E:22-150
1d
d1bxng2
G:22-150
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Alcaligenes eutrophus [TaxId: 106590]
(1)
2a
d1bxni_
I:
2b
d1bxnj_
J:
2c
d1bxnk_
K:
2d
d1bxnl_
L:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(40)
Alcaligenes eutrophus [TaxId: 106590]
(1)
3a
d1bxna1
A:151-467
3b
d1bxnc1
C:151-467
3c
d1bxne1
E:151-467
3d
d1bxng1
G:151-467
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1bxnA01 (A:25-151)
1b: CATH_1bxnC01 (C:25-151)
1c: CATH_1bxnE01 (E:25-151)
1d: CATH_1bxnG01 (G:25-151)
2a: CATH_1bxnI00 (I:1-129)
2b: CATH_1bxnJ00 (J:1-129)
2c: CATH_1bxnK00 (K:1-129)
2d: CATH_1bxnL00 (L:1-129)
3a: CATH_1bxnA02 (A:152-464)
3b: CATH_1bxnC02 (C:152-464)
3c: CATH_1bxnE02 (E:152-464)
3d: CATH_1bxnG02 (G:152-464)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Cupriavidus necator. Organism_taxid: 106590.
(1)
1a
1bxnA01
A:25-151
1b
1bxnC01
C:25-151
1c
1bxnE01
E:25-151
1d
1bxnG01
G:25-151
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Cupriavidus necator. Organism_taxid: 106590.
(1)
2a
1bxnI00
I:1-129
2b
1bxnJ00
J:1-129
2c
1bxnK00
K:1-129
2d
1bxnL00
L:1-129
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Cupriavidus necator. Organism_taxid: 106590.
(1)
3a
1bxnA02
A:152-464
3b
1bxnC02
C:152-464
3c
1bxnE02
E:152-464
3d
1bxnG02
G:152-464
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (343 KB)
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