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(-) Description

Title :  A FIBRONECTIN TYPE III FOLD IN PLANT ALLERGENS: THE SOLUTION STRUCTURE OF PHL PII FROM TIMOTHY GRASS POLLEN, NMR, 38 STRUCTURES
 
Authors :  S. De Marino, M. A. C. Morelli, F. Fraternali, E. Tamborino, S. Vrtala, C. Dolecek, P. Arosio, R. Valenta, A. Pastore
Date :  27 Jul 98  (Deposition) - 13 Jan 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (38x)
Keywords :  Allergen, Allergy, Immunoglobulins, Immunology, Nmr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. De Marino, M. A. Morelli, F. Fraternali, E. Tamborino, S. Vrtala, C. Dolocek, P. Arosio, R. Valenta, A. Pastore
An Immunoglobulin-Like Fold In A Major Plant Allergen: The Solution Structure Of Phl P 2 From Timothy Grass Pollen.
Structure Fold. Des. V. 7 943 1999
PubMed-ID: 10467147  |  Reference-DOI: 10.1016/S0969-2126(99)80121-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - POLLEN ALLERGEN PHL P2
    Cell Line: BL21
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMW 172
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Organism Common: TIMOTHY GRASS
    Organism Scientific: PHLEUM PRATENSE
    Organism Taxid: 15957
    Synonym: PHL P II

 Structural Features

(-) Chains, Units

  
NMR Structure (38x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BMW)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EXPANSIN_CBDPS50843 Expansin, Cellulose-binding-like domain profile.MPAP2_PHLPR41-120  1A:15-94

(-) Exons   (0, 0)

(no "Exon" information available for 1BMW)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
 aligned with MPAP2_PHLPR | P43214 from UniProtKB/Swiss-Prot  Length:122

    Alignment length:94
                                    36        46        56        66        76        86        96       106       116    
          MPAP2_PHLPR    27 VPKVTFTVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDDVVPEKYTIGATYAP 120
               SCOP domains d1bmwa_ A: PHL P 2                                                                             SCOP domains
               CATH domains 1bmwA00 A:1-94  [code=2.60.40.760, no name defined]                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eee...........eee..................eee...........eee.......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------EXPANSIN_CBD  PDB: A:15-94 UniProt: 41-120                                       PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1bmw A   1 VPKVTFTVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDDVVPEKYTIGATYAP  94
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BMW)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (MPAP2_PHLPR | P43214)
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MPAP2_PHLPR | P43214: 1who 1whp 2vxq

(-) Related Entries Specified in the PDB File

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