1BJQ - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE DOLICHOS BIFLORUS SEED LECTIN IN COMPLEX WITH ADENINE

Authors :   T. W. Hamelryck, R. Loris, J. Bouckaert, M. H. Dao-Thi, L. Wyns, M. Etzler

Date :   26 Jun 98 (Deposition) - 30 Dec 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)

Keywords :   Glycoprotein, Lectin, Adenine, Quaternary Structure, Legume Lectin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. W. Hamelryck, R. Loris, J. Bouckaert, M. H. Dao-Thi, G. Strecker, A. Imberty, E. Fernandez, L. Wyns, M. E. Etzler
Carbohydrate Binding, Quaternary Structure And A Novel Hydrophobic Binding Site In Two Legume Lectin Oligomers From Dolichos Biflorus.
J. Mol. Biol. V. 286 1161 1999
PubMed-ID: 10047489 | Reference-DOI: 10.1006/JMBI.1998.2534
(for further references see the PDB file header)

Molecule 1 - LECTIN
	Cell Line	:	BL21
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	BL21
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET-8C
	Organ	:	SEEDS
	Organism Common	:	HORSE GRAM
	Organism Scientific	:	VIGNA UNGUICULATA SUBSP. CYLINDRICA
	Organism Taxid	:	3840
	Other Details	:	DOLICHOS BIFLORUS SEED LECTIN
	Strain	:	SUBSP. CYLINDRICA
	Synonym	:	DBL

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:					E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 24)

No.	Name	Count	Type	Full Name
1	ADE	8	Ligand/Ion	ADENINE
2	CA	8	Ligand/Ion	CALCIUM ION
3	MN	8	Ligand/Ion	MANGANESE (II) ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	ADE	4	Ligand/Ion	ADENINE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MN	-1	Ligand/Ion	MANGANESE (II) ION

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	ADE	4	Ligand/Ion	ADENINE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MN	-1	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:125 , LEU A:127 , ASN A:129 , ASP A:133	BINDING SITE FOR RESIDUE CA A 301
02	AC2	SOFTWARE	GLU A:123 , ASP A:125 , ASP A:133 , HIS A:138 , SER A:148	BINDING SITE FOR RESIDUE MN A 302
03	AC3	SOFTWARE	ASP B:125 , LEU B:127 , ASN B:129 , ASP B:133	BINDING SITE FOR RESIDUE CA B 301
04	AC4	SOFTWARE	GLU B:123 , ASP B:125 , ASP B:133 , HIS B:138	BINDING SITE FOR RESIDUE MN B 302
05	AC5	SOFTWARE	ASP C:125 , LEU C:127 , ASN C:129 , ASP C:133	BINDING SITE FOR RESIDUE CA C 301
06	AC6	SOFTWARE	GLU C:123 , ASP C:125 , ASP C:133 , HIS C:138 , SER C:148	BINDING SITE FOR RESIDUE MN C 302
07	AC7	SOFTWARE	ASP D:125 , LEU D:127 , ASN D:129 , ASP D:133	BINDING SITE FOR RESIDUE CA D 301
08	AC8	SOFTWARE	GLU D:123 , ASP D:125 , ASP D:133 , HIS D:138	BINDING SITE FOR RESIDUE MN D 302
09	AC9	SOFTWARE	ASP E:125 , LEU E:127 , ASN E:129 , ASP E:133	BINDING SITE FOR RESIDUE CA E 301
10	BC1	SOFTWARE	GLU E:123 , ASP E:125 , ASP E:133 , HIS E:138	BINDING SITE FOR RESIDUE MN E 302
11	BC2	SOFTWARE	ASP F:125 , LEU F:127 , ASN F:129 , ASP F:133	BINDING SITE FOR RESIDUE CA F 301
12	BC3	SOFTWARE	GLU F:123 , ASP F:125 , ASP F:133 , HIS F:138 , SER F:148	BINDING SITE FOR RESIDUE MN F 302
13	BC4	SOFTWARE	ASP G:125 , LEU G:127 , ASN G:129 , ASP G:133	BINDING SITE FOR RESIDUE CA G 301
14	BC5	SOFTWARE	GLU G:123 , ASP G:125 , ASP G:133 , HIS G:138 , SER G:148	BINDING SITE FOR RESIDUE MN G 302
15	BC6	SOFTWARE	ASP H:125 , LEU H:127 , ASN H:129 , ASP H:133	BINDING SITE FOR RESIDUE CA H 301
16	BC7	SOFTWARE	GLU H:123 , ASP H:125 , ASP H:133 , HIS H:138	BINDING SITE FOR RESIDUE MN H 302
17	BC8	SOFTWARE	LEU A:165 , ILE A:166 , THR A:167 , VAL A:176 , SER A:178 , SER C:178 , ADE C:601	BINDING SITE FOR RESIDUE ADE A 601
18	BC9	SOFTWARE	LEU B:165 , ILE B:166 , THR B:167 , VAL B:176 , SER B:178 , SER D:178 , ADE D:601	BINDING SITE FOR RESIDUE ADE B 601
19	CC1	SOFTWARE	SER A:178 , ADE A:601 , LEU C:165 , ILE C:166 , THR C:167 , VAL C:176 , SER C:178	BINDING SITE FOR RESIDUE ADE C 601
20	CC2	SOFTWARE	SER B:178 , ADE B:601 , LEU D:165 , THR D:167 , VAL D:176 , SER D:178	BINDING SITE FOR RESIDUE ADE D 601
21	CC3	SOFTWARE	LEU E:165 , ILE E:166 , THR E:167 , VAL E:176 , SER E:178 , SER G:178 , ADE G:601	BINDING SITE FOR RESIDUE ADE E 601
22	CC4	SOFTWARE	LEU F:165 , ILE F:166 , THR F:167 , VAL F:176 , SER F:178 , SER H:178 , ADE H:601	BINDING SITE FOR RESIDUE ADE F 601
23	CC5	SOFTWARE	SER E:178 , ADE E:601 , LEU G:165 , ILE G:166 , THR G:167 , VAL G:176 , SER G:178	BINDING SITE FOR RESIDUE ADE G 601
24	CC6	SOFTWARE	SER F:178 , ADE F:601 , LEU H:165 , THR H:167 , VAL H:176 , SER H:178	BINDING SITE FOR RESIDUE ADE H 601

(no "SS Bond" information available for 1BJQ)

Asymmetric Unit

No.	Residues
1	Ala A:84	-	Asp A:85
2	Ala B:84	-	Asp B:85
3	Ala C:84	-	Asp C:85
4	Ala D:84	-	Asp D:85
5	Ala E:84	-	Asp E:85
6	Ala F:84	-	Asp F:85
7	Ala G:84	-	Asp G:85
8	Ala H:84	-	Asp H:85

(no "SAP(SNP)/Variant" information available for 1BJQ)

Asymmetric Unit (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LECTIN_LEGUME_BETA	PS00307	Legume lectins beta-chain signature.	LEC1_VIGUC	142-148	8	A:120-126 B:120-126 C:120-126 D:120-126 E:120-126 F:120-126 G:120-126 H:120-126
2	LECTIN_LEGUME_ALPHA	PS00308	Legume lectins alpha-chain signature.	LEC1_VIGUC	222-231	8	A:200-209 B:200-209 C:200-209 D:200-209 E:200-209 F:200-209 G:200-209 H:200-209

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LECTIN_LEGUME_BETA	PS00307	Legume lectins beta-chain signature.	LEC1_VIGUC	142-148	4	A:120-126 B:120-126 C:120-126 D:120-126 - - - -
2	LECTIN_LEGUME_ALPHA	PS00308	Legume lectins alpha-chain signature.	LEC1_VIGUC	222-231	4	A:200-209 B:200-209 C:200-209 D:200-209 - - - -

Biological Unit 2 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LECTIN_LEGUME_BETA	PS00307	Legume lectins beta-chain signature.	LEC1_VIGUC	142-148	4	- - - - E:120-126 F:120-126 G:120-126 H:120-126
2	LECTIN_LEGUME_ALPHA	PS00308	Legume lectins alpha-chain signature.	LEC1_VIGUC	222-231	4	- - - - E:200-209 F:200-209 G:200-209 H:200-209

(no "Exon" information available for 1BJQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:251
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:253
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 275
               SCOP domains d1bjqa_ A: Legume lectin                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1bjqA00 A:1-253  [code=2.60.120.200, no name defined]                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeeeee..--....eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee........eeeeeeeeeeeee..........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq A   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAP--ASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 253
                                    10        20        30        40        50        60        70       | -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   
                                                                                                        78 81

Chain B from PDB  Type:PROTEIN  Length:253
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:253
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 275
               SCOP domains d1bjqb_ B: Legume lectin                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1bjqB00 B:1-253  [code=2.60.120.200, no name defined]                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee..........eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee..........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq B   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 253
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250

Chain C from PDB  Type:PROTEIN  Length:233
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:235
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252     
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 257
               SCOP domains d1bjqc_ C: Legume lectin                                                                                                                                                                                                                    SCOP domains
               CATH domains 1bjqC00 C:1-235  [code=2.60.120.200, no name defined]                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee....--....eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq C   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAP--ASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 235
                                    10        20        30        40        50        60        70       | -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     
                                                                                                        78 81

Chain D from PDB  Type:PROTEIN  Length:233
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:235
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252     
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 257
               SCOP domains d1bjqd_ D: Legume lectin                                                                                                                                                                                                                    SCOP domains
               CATH domains 1bjqD00 D:1-235  [code=2.60.120.200, no name defined]                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee....--....eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq D   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAP--ASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 235
                                    10        20        30        40        50        60        70       | -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     
                                                                                                        78 81

Chain E from PDB  Type:PROTEIN  Length:233
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:235
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252     
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 257
               SCOP domains d1bjqe_ E: Legume lectin                                                                                                                                                                                                                    SCOP domains
               CATH domains 1bjqE00 E:1-235  [code=2.60.120.200, no name defined]                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee....--....eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq E   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAP--ASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 235
                                    10        20        30        40        50        60        70       | -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     
                                                                                                        78 81

Chain F from PDB  Type:PROTEIN  Length:233
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:235
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252     
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 257
               SCOP domains d1bjqf_ F: Legume lectin                                                                                                                                                                                                                    SCOP domains
               CATH domains 1bjqF00 F:1-235  [code=2.60.120.200, no name defined]                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee....--....eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq F   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAP--ASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPD 235
                                    10        20        30        40        50        60        70       | -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     
                                                                                                        78 81

Chain G from PDB  Type:PROTEIN  Length:251
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:253
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 275
               SCOP domains d1bjqg_ G: Legume lectin                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1bjqG00 G:1-253  [code=2.60.120.200, no name defined]                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee....--....eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee..........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq G   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAP--ASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 253
                                    10        20        30        40        50        60        70       | -|       90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   
                                                                                                        78 81

Chain H from PDB  Type:PROTEIN  Length:253
 aligned with LEC1_VIGUC | P05045 from UniProtKB/Swiss-Prot  Length:275

    Alignment length:253
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   
           LEC1_VIGUC    23 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 275
               SCOP domains d1bjqh_ H: Legume lectin                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1bjqH00 H:1-253  [code=2.60.120.200, no name defined]                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhheeeee..eee..eee..............eeeeee...............eeeeeeeee..........eeeeeeeee........hhh..........hhh..eeeeee............eeeeee......eeee.......eeeeeeeee....eeeeeeee....eeeeeeee..hhhh....eeeeeeeee..........eeeeeeeeeee..........hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------LECTIN_-------------------------------------------------------------------------LECTIN_LEG-------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bjq H   1 ANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTLSNSGWDPSMKHIGIDVNSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFASKLPDDSTAEPLDLASYLVRNVL 253
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Concanavalin A-like lectins/glucanases (797)

Superfamily: Concanavalin A-like lectins/glucanases (797)

Family: Legume lectins (238)

Protein domain: Legume lectin (110)

Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840] (5)

1a	d1bjqa_	A:
1b	d1bjqb_	B:
1c	d1bjqc_	C:
1d	d1bjqd_	D:
1e	d1bjqe_	E:
1f	d1bjqf_	F:
1g	d1bjqg_	G:
1h	d1bjqh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: [code=2.60.120.200, no name defined] (421)

Cylindrica (Vigna unguiculata subsp) (5)

1a	1bjqC00	C:1-235
1b	1bjqD00	D:1-235
1c	1bjqE00	E:1-235
1d	1bjqF00	F:1-235
1e	1bjqA00	A:1-253
1f	1bjqG00	G:1-253
1g	1bjqB00	B:1-253
1h	1bjqH00	H:1-253

(no "Pfam Domain" information available for 1BJQ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (LEC1_VIGUC | P05045)

molecular function
	GO:0030246		carbohydrate binding		Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0005537		mannose binding		Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:84 - Asp A:85	[ RasMol ]
		Ala B:84 - Asp B:85	[ RasMol ]
		Ala C:84 - Asp C:85	[ RasMol ]
		Ala D:84 - Asp D:85	[ RasMol ]
		Ala E:84 - Asp E:85	[ RasMol ]
		Ala F:84 - Asp F:85	[ RasMol ]
		Ala G:84 - Asp G:85	[ RasMol ]
		Ala H:84 - Asp H:85	[ RasMol ]

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	1bjq
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	LEC1_VIGUC \| P05045	:	1lu1 1lu2

(no "Related Entries Specified in the PDB File" available for 1BJQ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 16)

Exons (0, 0)

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SCOP Domains (1, 8)

CATH Domains (1, 8)

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