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1BJQ
Biol. Unit 1
Info
Asym.Unit (303 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (152 KB)
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(1)
Title
:
THE DOLICHOS BIFLORUS SEED LECTIN IN COMPLEX WITH ADENINE
Authors
:
T. W. Hamelryck, R. Loris, J. Bouckaert, M. H. Dao-Thi, L. Wyns, M. Etzler
Date
:
26 Jun 98 (Deposition) - 30 Dec 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Glycoprotein, Lectin, Adenine, Quaternary Structure, Legume Lectin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. W. Hamelryck, R. Loris, J. Bouckaert, M. H. Dao-Thi, G. Strecker, A. Imberty, E. Fernandez, L. Wyns, M. E. Etzler
Carbohydrate Binding, Quaternary Structure And A Novel Hydrophobic Binding Site In Two Legume Lectin Oligomers From Dolichos Biflorus.
J. Mol. Biol. V. 286 1161 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ADENINE (ADEa)
1b: ADENINE (ADEb)
1c: ADENINE (ADEc)
1d: ADENINE (ADEd)
1e: ADENINE (ADEe)
1f: ADENINE (ADEf)
1g: ADENINE (ADEg)
1h: ADENINE (ADEh)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADE
4
Ligand/Ion
ADENINE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:125 , LEU A:127 , ASN A:129 , ASP A:133
BINDING SITE FOR RESIDUE CA A 301
02
AC2
SOFTWARE
GLU A:123 , ASP A:125 , ASP A:133 , HIS A:138 , SER A:148
BINDING SITE FOR RESIDUE MN A 302
03
AC3
SOFTWARE
ASP B:125 , LEU B:127 , ASN B:129 , ASP B:133
BINDING SITE FOR RESIDUE CA B 301
04
AC4
SOFTWARE
GLU B:123 , ASP B:125 , ASP B:133 , HIS B:138
BINDING SITE FOR RESIDUE MN B 302
05
AC5
SOFTWARE
ASP C:125 , LEU C:127 , ASN C:129 , ASP C:133
BINDING SITE FOR RESIDUE CA C 301
06
AC6
SOFTWARE
GLU C:123 , ASP C:125 , ASP C:133 , HIS C:138 , SER C:148
BINDING SITE FOR RESIDUE MN C 302
07
AC7
SOFTWARE
ASP D:125 , LEU D:127 , ASN D:129 , ASP D:133
BINDING SITE FOR RESIDUE CA D 301
08
AC8
SOFTWARE
GLU D:123 , ASP D:125 , ASP D:133 , HIS D:138
BINDING SITE FOR RESIDUE MN D 302
09
BC8
SOFTWARE
LEU A:165 , ILE A:166 , THR A:167 , VAL A:176 , SER A:178 , SER C:178 , ADE C:601
BINDING SITE FOR RESIDUE ADE A 601
10
BC9
SOFTWARE
LEU B:165 , ILE B:166 , THR B:167 , VAL B:176 , SER B:178 , SER D:178 , ADE D:601
BINDING SITE FOR RESIDUE ADE B 601
11
CC1
SOFTWARE
SER A:178 , ADE A:601 , LEU C:165 , ILE C:166 , THR C:167 , VAL C:176 , SER C:178
BINDING SITE FOR RESIDUE ADE C 601
12
CC2
SOFTWARE
SER B:178 , ADE B:601 , LEU D:165 , THR D:167 , VAL D:176 , SER D:178
BINDING SITE FOR RESIDUE ADE D 601
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:120-126,B:120-126,C:120-126,D:12...)
2: LECTIN_LEGUME_ALPHA (A:200-209,B:200-209,C:200-209,D:20...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC1_VIGUC
142-148
4
A:120-126
B:120-126
C:120-126
D:120-126
-
-
-
-
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LEC1_VIGUC
222-231
4
A:200-209
B:200-209
C:200-209
D:200-209
-
-
-
-
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1bjqa_ (A:)
1b: SCOP_d1bjqb_ (B:)
1c: SCOP_d1bjqc_ (C:)
1d: SCOP_d1bjqd_ (D:)
1e: SCOP_d1bjqe_ (E:)
1f: SCOP_d1bjqf_ (F:)
1g: SCOP_d1bjqg_ (G:)
1h: SCOP_d1bjqh_ (H:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Horse gram (Dolichos biflorus), different isoforms [TaxId: 3840]
(5)
1a
d1bjqa_
A:
1b
d1bjqb_
B:
1c
d1bjqc_
C:
1d
d1bjqd_
D:
1e
d1bjqe_
E:
1f
d1bjqf_
F:
1g
d1bjqg_
G:
1h
d1bjqh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1bjqC00 (C:1-235)
1b: CATH_1bjqD00 (D:1-235)
1c: CATH_1bjqE00 (E:1-235)
1d: CATH_1bjqF00 (F:1-235)
1e: CATH_1bjqA00 (A:1-253)
1f: CATH_1bjqG00 (G:1-253)
1g: CATH_1bjqB00 (B:1-253)
1h: CATH_1bjqH00 (H:1-253)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Cylindrica (Vigna unguiculata subsp)
(5)
1a
1bjqC00
C:1-235
1b
1bjqD00
D:1-235
1c
1bjqE00
E:1-235
1d
1bjqF00
F:1-235
1e
1bjqA00
A:1-253
1f
1bjqG00
G:1-253
1g
1bjqB00
B:1-253
1h
1bjqH00
H:1-253
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Pfam Domains
(0, 0)
Info
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (303 KB)
Header - Asym.Unit
Biol.Unit 1 (152 KB)
Header - Biol.Unit 1
Biol.Unit 2 (152 KB)
Header - Biol.Unit 2
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