1BCP - JenaLib

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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   BINARY COMPLEX OF PERTUSSIS TOXIN AND ATP

Authors :   B. Hazes, R. J. Read

Date :   21 Nov 95 (Deposition) - 05 Jun 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F  (1x)
Biol. Unit 2: G,H,I,J,K,L  (1x)

Keywords :   Toxin, Adp-Ribosyltransferase, Transferase, Whooping Cough (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Hazes, A. Boodhoo, S. A. Cockle, R. J. Read
Crystal Structure Of The Pertussis Toxin-Atp Complex: A Molecular Sensor.
J. Mol. Biol. V. 258 661 1996
PubMed-ID: 8637000 | Reference-DOI: 10.1006/JMBI.1996.0277
(for further references see the PDB file header)

Molecule 1 - PERTUSSIS TOXIN
	Chains	:	A, G
	EC Number	:	2.4.2.-
	Organism Scientific	:	BORDETELLA PERTUSSIS
	Organism Taxid	:	520
	Other Details	:	THE PERTUSSIS TOXIN USED FOR THIS WORK WAS PURIFIED FROM B. PERTUSSIS STRAIN 10536 (LOOSMORE ET AL., NUCLEIC ACIDS RES., VOL. 17, 8365, 1989), WHICH DIFFERS AT TWO POSITIONS IN SUBUNIT S1 (ASP 34 GLU AND ILE 198 VAL) FROM THE SEQUENCE THAT WAS FIRST REPORTED FOR THE PROTEIN (NICOSIA ET AL., PNAS VOL 83, 4631 - 4635, 1986).
	Strain	:	10536

Molecule 2 - PERTUSSIS TOXIN
	Chains	:	B, H
	EC Number	:	2.4.2.-
	Organism Scientific	:	BORDETELLA PERTUSSIS
	Organism Taxid	:	520
	Other Details	:	THE PERTUSSIS TOXIN USED FOR THIS WORK WAS PURIFIED FROM B. PERTUSSIS STRAIN 10536 (LOOSMORE ET AL., NUCLEIC ACIDS RES., VOL. 17, 8365, 1989), WHICH DIFFERS AT TWO POSITIONS IN SUBUNIT S1 (ASP 34 GLU AND ILE 198 VAL) FROM THE SEQUENCE THAT WAS FIRST REPORTED FOR THE PROTEIN (NICOSIA ET AL., PNAS VOL 83, 4631 - 4635, 1986).
	Strain	:	10536

Molecule 3 - PERTUSSIS TOXIN
	Chains	:	C, I
	EC Number	:	2.4.2.-
	Organism Scientific	:	BORDETELLA PERTUSSIS
	Organism Taxid	:	520
	Other Details	:	THE PERTUSSIS TOXIN USED FOR THIS WORK WAS PURIFIED FROM B. PERTUSSIS STRAIN 10536 (LOOSMORE ET AL., NUCLEIC ACIDS RES., VOL. 17, 8365, 1989), WHICH DIFFERS AT TWO POSITIONS IN SUBUNIT S1 (ASP 34 GLU AND ILE 198 VAL) FROM THE SEQUENCE THAT WAS FIRST REPORTED FOR THE PROTEIN (NICOSIA ET AL., PNAS VOL 83, 4631 - 4635, 1986).
	Strain	:	10536

Molecule 4 - PERTUSSIS TOXIN
	Chains	:	D, E, J, K
	EC Number	:	2.4.2.-
	Organism Scientific	:	BORDETELLA PERTUSSIS
	Organism Taxid	:	520
	Other Details	:	THE PERTUSSIS TOXIN USED FOR THIS WORK WAS PURIFIED FROM B. PERTUSSIS STRAIN 10536 (LOOSMORE ET AL., NUCLEIC ACIDS RES., VOL. 17, 8365, 1989), WHICH DIFFERS AT TWO POSITIONS IN SUBUNIT S1 (ASP 34 GLU AND ILE 198 VAL) FROM THE SEQUENCE THAT WAS FIRST REPORTED FOR THE PROTEIN (NICOSIA ET AL., PNAS VOL 83, 4631 - 4635, 1986).
	Strain	:	10536

Molecule 5 - PERTUSSIS TOXIN
	Chains	:	F, L
	EC Number	:	2.4.2.-
	Organism Scientific	:	BORDETELLA PERTUSSIS
	Organism Taxid	:	520
	Other Details	:	THE PERTUSSIS TOXIN USED FOR THIS WORK WAS PURIFIED FROM B. PERTUSSIS STRAIN 10536 (LOOSMORE ET AL., NUCLEIC ACIDS RES., VOL. 17, 8365, 1989), WHICH DIFFERS AT TWO POSITIONS IN SUBUNIT S1 (ASP 34 GLU AND ILE 198 VAL) FROM THE SEQUENCE THAT WAS FIRST REPORTED FOR THE PROTEIN (NICOSIA ET AL., PNAS VOL 83, 4631 - 4635, 1986).
	Strain	:	10536

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B	C	D	E	F
Biological Unit 2 (1x)	:							G	H	I	J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:235 , ARG B:150 , LYS B:151 , ARG C:150 , ARG C:151 , MET E:18 , SER E:61 , GLU E:65 , ARG E:69 , HOH E:112 , HOH E:114 , THR F:55 , GLY F:58 , SER F:62	BINDING SITE FOR RESIDUE ATP E 111
2	AC2	SOFTWARE	PHE G:235 , ARG H:150 , LYS H:151 , ARG I:150 , ARG I:151 , MET K:18 , SER K:61 , GLU K:65 , ARG K:69 , PHE K:72 , HOH K:112 , HOH K:114 , GLY L:58 , SER L:62	BINDING SITE FOR RESIDUE ATP K 111

Asymmetric Unit

No.	Residues
1	A:41	-	A:201
2	B:23	-	B:87
3	B:120	-	B:134
4	B:192	-	B:199
5	C:23	-	C:87
6	C:120	-	C:134
7	C:192	-	C:199
8	D:31	-	D:51
9	D:103	-	D:109
10	E:31	-	E:51
11	E:103	-	E:109
12	F:27	-	F:41
13	F:92	-	F:98
14	G:41	-	G:201
15	H:23	-	H:87
16	H:120	-	H:134
17	H:192	-	H:199
18	I:23	-	I:87
19	I:120	-	I:134
20	I:192	-	I:199
21	J:31	-	J:51
22	J:103	-	J:109
23	K:31	-	K:51
24	K:103	-	K:109
25	L:27	-	L:41
26	L:92	-	L:98

Asymmetric Unit

No.	Residues
1	Ala A:195	-	Pro A:196
2	Gly D:83	-	Pro D:84
3	Gly E:83	-	Pro E:84
4	Ala G:195	-	Pro G:196
5	Gly J:83	-	Pro J:84
6	Gly K:83	-	Pro K:84

Asymmetric Unit (6, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TOX1_BORPE_001 *	D	68	E	TOX1_BORPE	---	---	A/G	E	34	E
2	UniProt	VAR_TOX1_BORPE_002 *	N	129	S	TOX1_BORPE	---	---	A/G	N	95	S
3	UniProt	VAR_TOX1_BORPE_003 *	S	196	P	TOX1_BORPE	---	---	A/G	S	162	P
4	UniProt	VAR_TOX1_BORPE_004 *	M	228	I	TOX1_BORPE	---	---	A/G	M	194	I
5	UniProt	VAR_TOX1_BORPE_005 *	I	232	M	TOX1_BORPE	---	---	A/G	V	198	M
6	UniProt	VAR_TOX1_BORPE_006 *	I	232	V	TOX1_BORPE	---	---	A/G	V	198	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (6, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TOX1_BORPE_001 *	D	68	E	TOX1_BORPE	---	---	A	E	34	E
2	UniProt	VAR_TOX1_BORPE_002 *	N	129	S	TOX1_BORPE	---	---	A	N	95	S
3	UniProt	VAR_TOX1_BORPE_003 *	S	196	P	TOX1_BORPE	---	---	A	S	162	P
4	UniProt	VAR_TOX1_BORPE_004 *	M	228	I	TOX1_BORPE	---	---	A	M	194	I
5	UniProt	VAR_TOX1_BORPE_005 *	I	232	M	TOX1_BORPE	---	---	A	V	198	M
6	UniProt	VAR_TOX1_BORPE_006 *	I	232	V	TOX1_BORPE	---	---	A	V	198	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (6, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TOX1_BORPE_001 *	D	68	E	TOX1_BORPE	---	---	G	E	34	E
2	UniProt	VAR_TOX1_BORPE_002 *	N	129	S	TOX1_BORPE	---	---	G	N	95	S
3	UniProt	VAR_TOX1_BORPE_003 *	S	196	P	TOX1_BORPE	---	---	G	S	162	P
4	UniProt	VAR_TOX1_BORPE_004 *	M	228	I	TOX1_BORPE	---	---	G	M	194	I
5	UniProt	VAR_TOX1_BORPE_005 *	I	232	M	TOX1_BORPE	---	---	G	V	198	M
6	UniProt	VAR_TOX1_BORPE_006 *	I	232	V	TOX1_BORPE	---	---	G	V	198	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1BCP)

(no "Exon" information available for 1BCP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:224
 aligned with TOX1_BORPE | P04977 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:234
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265    
           TOX1_BORPE    36 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQAESSEAMAAWSERAGEAMVLVYYESIAYSF 269
               SCOP domains d1bcpa_ A: Pertussis toxin, S1 subunit                                                                                                                                                                                                     SCOP domains
               CATH domains 1bcpA00 A:2-235 Heat-Labile Enterotoxin, subunit A                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhh..........hhhhhh.hhh........eeeee..hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee....eeehhhhhhhhhhhh.hhh..hhhhhhhhhh.eeeee....hhh..eeeeeeee....eeeeeeee............................eee......hhhhhhh....----------....eeehhhh.... Sec.struct. author
             SAPs(SNPs) (1) --------------------------------E------------------------------------------------------------S------------------------------------------------------------------P-------------------------------I---M------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1bcp A   2 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLEHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVVGACMARQAESSE----------EAMVLVYYESIAYSF 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        |-       221       231    
                                                                                                                                                                                                                                          210        221

Chain B from PDB  Type:PROTEIN  Length:197
 aligned with TOX2_BORPE | P04978 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:197
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       
           TOX2_BORPE    30 PGIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 226
               SCOP domains d1bcpb2 B:3-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                      d1bcpb1 B:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains -1bcpB01 B:4-89 Pertussis Toxin, subunit B, domain 1                                   1bcpB02 B:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh..............eee..hhhhhh.hhhhhhhhhh.....eeee..eeee.hhh..eeee.............eee...........eee...eee..eee....eeeeee....eeeeeee........hhhhhhhhhhhhhhhh.....eeee..............eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp B   3 PGIVIPPQEQITQHGSPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 199
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain C from PDB  Type:PROTEIN  Length:196
 aligned with TOX3_BORPE | P04979 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:196
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
           TOX3_BORPE    32 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 227
               SCOP domains d1bcpc2 C:4-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                     d1bcpc1 C:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains 1bcpC01 C:4-89 Pertussis Toxin, subunit B, domain 1                                   1bcpC02 C:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh......hhh.....eee..hhhhhh.hhhhhhhhhh.....eee....eee......eee.....hhhh.....eee.eee.......eeeeee............eeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhh....eeeeee..eee.........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp C   4 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain D from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1bcpd_ D: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1bcpD00 D:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeeeeeeee......eeeeeeeeee.......hhh.eeeeeeee.......hhhhhhhhhhhh...eeeee...eeee..eeee.eeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp D   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110

Chain E from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1bcpe_ E: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1bcpE00 E:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.eee..eeeee......eeeeeeeeee.......hhh.eeeeeeee.......hhhhhhhhhhhh....eeee...eee....eee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp E   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110

Chain F from PDB  Type:PROTEIN  Length:98
 aligned with TOX5_BORPE | P04981 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:98
                                    45        55        65        75        85        95       105       115       125        
           TOX5_BORPE    36 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE 133
               SCOP domains d1bcpf_ F: Pertussis toxin S5 subunit                                                              SCOP domains
               CATH domains 1bcpF00 F:2-99  [code=2.40.50.110, no name defined]                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee..eeeeeeeee......eeeeee........hhhhhhhhhhhhhhh.....................eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1bcp F   2 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE  99
                                    11        21        31        41        51        61        71        81        91

Chain G from PDB  Type:PROTEIN  Length:224
 aligned with TOX1_BORPE | P04977 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:234
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265    
           TOX1_BORPE    36 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQAESSEAMAAWSERAGEAMVLVYYESIAYSF 269
               SCOP domains d1bcpg_ G: Pertussis toxin, S1 subunit                                                                                                                                                                                                     SCOP domains
               CATH domains 1bcpG00 G:2-235 Heat-Labile Enterotoxin, subunit A                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhh..........hhhhhh.hhh........eeeee..hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee....eeehhhhhhhhhhhh.hhh..hhhhhhhhhh.eeeee....hhh..eeeeeeee....eeeeeeee............................eee......hhhhhhh....----------....eeehhhh.... Sec.struct. author
             SAPs(SNPs) (1) --------------------------------E------------------------------------------------------------S------------------------------------------------------------------P-------------------------------I---M------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1bcp G   2 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLEHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVVGACMARQAESSE----------EAMVLVYYESIAYSF 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        |-       221       231    
                                                                                                                                                                                                                                          210        221

Chain H from PDB  Type:PROTEIN  Length:197
 aligned with TOX2_BORPE | P04978 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:197
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       
           TOX2_BORPE    30 PGIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 226
               SCOP domains d1bcph2 H:3-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                      d1bcph1 H:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains -1bcpH01 H:4-89 Pertussis Toxin, subunit B, domain 1                                   1bcpH02 H:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh..............eee..hhhhhh.hhhhhhhhhh.....eeee..eeee.hhh..eeee.............eee...........eee...eee..eee....eeeeee....eeeeeee........hhhhhhhhhhhhhhhh.....eeee..............eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp H   3 PGIVIPPQEQITQHGSPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 199
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192

Chain I from PDB  Type:PROTEIN  Length:196
 aligned with TOX3_BORPE | P04979 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:196
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
           TOX3_BORPE    32 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 227
               SCOP domains d1bcpi2 I:4-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                     d1bcpi1 I:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains 1bcpI01 I:4-89 Pertussis Toxin, subunit B, domain 1                                   1bcpI02 I:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh......hhh.....eee..hhhhhh.hhhhhhhhhh.....eee....eee......eee.....hhhh.....eee.eee.......eeeeeeeee.........eeeeeee..eeeeeeee......hhhhhhhhhhhhhhhhh....eeeeee..eee.........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp I   4 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain J from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1bcpj_ J: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1bcpJ00 J:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eeeeeeeeee......eeeeeeeeee.......hhh.eeeeeeee.......hhhhhhhhhhhh...eeeee...eeee..eeee.eeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp J   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110

Chain K from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1bcpk_ K: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1bcpK00 K:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.eee..eeeee......eeeeeeeeee.......hhh.eee..eee.......hhhhhhhhhhhh....eeee...eee....eee............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1bcp K   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110

Chain L from PDB  Type:PROTEIN  Length:98
 aligned with TOX5_BORPE | P04981 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:98
                                    45        55        65        75        85        95       105       115       125        
           TOX5_BORPE    36 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE 133
               SCOP domains d1bcpl_ L: Pertussis toxin S5 subunit                                                              SCOP domains
               CATH domains 1bcpL00 L:2-99  [code=2.40.50.110, no name defined]                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeee..eeeeeeeee......eeeeee........hhhhhhhhhhhhhhh.....................eeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1bcp L   2 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE  99
                                    11        21        31        41        51        61        71        81        91

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1BCP)

Asymmetric Unit(hide GO term definitions)

Chain A,G (TOX1_BORPE | P04977)

molecular function
	GO:0003950	NAD+ ADP-ribosyltransferase activity	Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain B,H (TOX2_BORPE | P04978)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain C,I (TOX3_BORPE | P04979)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain D,E,J,K (TOX4_BORPE | P0A3R5)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain F,L (TOX5_BORPE | P04981)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:195 - Pro A:196	[ RasMol ]
		Ala G:195 - Pro G:196	[ RasMol ]
		Gly D:83 - Pro D:84	[ RasMol ]
		Gly E:83 - Pro E:84	[ RasMol ]
		Gly J:83 - Pro J:84	[ RasMol ]
		Gly K:83 - Pro K:84	[ RasMol ]

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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	1bcp
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	TOX1_BORPE \| P04977
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
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	TOX2_BORPE \| P04978
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	TOX3_BORPE \| P04979
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		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
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	TOX4_BORPE \| P0A3R5
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	TOX5_BORPE \| P04981
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	2.4.2.-
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	TOX1_BORPE \| P04977
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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	TOX3_BORPE \| P04979
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	TOX5_BORPE \| P04981
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UniProtKB/Swiss-Prot
	TOX1_BORPE \| P04977	:	1prt 1pto
	TOX2_BORPE \| P04978	:	1prt 1pto
	TOX3_BORPE \| P04979	:	1prt 1pto
	TOX4_BORPE \| P0A3R5	:	1prt 1pto
	TOX5_BORPE \| P04981	:	1prt 1pto

(no "Related Entries Specified in the PDB File" available for 1BCP)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (26, 26)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (6, 12)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (5, 16)

CATH Domains (3, 16)

Pfam Domains (0, 0)

Gene Ontology (8, 25)

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Related Entries Specified in the PDB File