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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PERTUSSIS TOXIN
 
Authors :  P. E. Stein, R. J. Read
Date :  22 Nov 93  (Deposition) - 26 Jan 95  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. E. Stein, A. Boodhoo, G. D. Armstrong, S. A. Cockle, M. H. Klein, R. J. Read
The Crystal Structure Of Pertussis Toxin.
Structure V. 2 45 1994
PubMed-ID: 8075982  |  Reference-DOI: 10.1016/S0969-2126(00)00007-1
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PERTUSSIS TOXIN (SUBUNIT S1)
    Chains: A, G
    Engineered: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520
 
Molecule 2 - PERTUSSIS TOXIN (SUBUNIT S2)
    Chains: B, H
    Engineered: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520
 
Molecule 3 - PERTUSSIS TOXIN (SUBUNIT S3)
    Chains: C, I
    Engineered: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520
 
Molecule 4 - PERTUSSIS TOXIN (SUBUNIT S4)
    Chains: D, E, J, K
    Engineered: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520
 
Molecule 5 - PERTUSSIS TOXIN (SUBUNIT S5)
    Chains: F, L
    Engineered: YES
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1PRT)

(-) Sites  (0, 0)

(no "Site" information available for 1PRT)

(-) SS Bonds  (26, 26)

Asymmetric Unit
No.Residues
1A:41 -A:201
2B:23 -B:87
3B:120 -B:134
4B:192 -B:199
5C:23 -C:87
6C:120 -C:134
7C:192 -C:199
8D:31 -D:51
9D:103 -D:109
10E:31 -E:51
11E:103 -E:109
12F:27 -F:41
13F:92 -F:98
14G:41 -G:201
15H:23 -H:87
16H:120 -H:134
17H:192 -H:199
18I:23 -I:87
19I:120 -I:134
20I:192 -I:199
21J:31 -J:51
22J:103 -J:109
23K:31 -K:51
24K:103 -K:109
25L:27 -L:41
26L:92 -L:98

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ala A:195 -Pro A:196
2Gly D:83 -Pro D:84
3Gly E:83 -Pro E:84
4Ala G:195 -Pro G:196
5Gly J:83 -Pro J:84
6Gly K:83 -Pro K:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 12)

Asymmetric Unit (6, 12)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TOX1_BORPE_001 *D68ETOX1_BORPE  ---  ---A/GE34E
2UniProtVAR_TOX1_BORPE_002 *N129STOX1_BORPE  ---  ---A/GN95S
3UniProtVAR_TOX1_BORPE_003 *S196PTOX1_BORPE  ---  ---A/GS162P
4UniProtVAR_TOX1_BORPE_004 *M228ITOX1_BORPE  ---  ---A/GM194I
5UniProtVAR_TOX1_BORPE_005 *I232MTOX1_BORPE  ---  ---A/GV198M
6UniProtVAR_TOX1_BORPE_006 *I232VTOX1_BORPE  ---  ---A/GV198V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (6, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TOX1_BORPE_001 *D68ETOX1_BORPE  ---  ---AE34E
2UniProtVAR_TOX1_BORPE_002 *N129STOX1_BORPE  ---  ---AN95S
3UniProtVAR_TOX1_BORPE_003 *S196PTOX1_BORPE  ---  ---AS162P
4UniProtVAR_TOX1_BORPE_004 *M228ITOX1_BORPE  ---  ---AM194I
5UniProtVAR_TOX1_BORPE_005 *I232MTOX1_BORPE  ---  ---AV198M
6UniProtVAR_TOX1_BORPE_006 *I232VTOX1_BORPE  ---  ---AV198V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (6, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TOX1_BORPE_001 *D68ETOX1_BORPE  ---  ---GE34E
2UniProtVAR_TOX1_BORPE_002 *N129STOX1_BORPE  ---  ---GN95S
3UniProtVAR_TOX1_BORPE_003 *S196PTOX1_BORPE  ---  ---GS162P
4UniProtVAR_TOX1_BORPE_004 *M228ITOX1_BORPE  ---  ---GM194I
5UniProtVAR_TOX1_BORPE_005 *I232MTOX1_BORPE  ---  ---GV198M
6UniProtVAR_TOX1_BORPE_006 *I232VTOX1_BORPE  ---  ---GV198V
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PRT)

(-) Exons   (0, 0)

(no "Exon" information available for 1PRT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with TOX1_BORPE | P04977 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:234
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265    
           TOX1_BORPE    36 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQAESSEAMAAWSERAGEAMVLVYYESIAYSF 269
               SCOP domains d1prta_ A: Pertussis toxin, S1 subunit                                                                                                                                                                                                     SCOP domains
               CATH domains 1prtA00 A:2-235 Heat-Labile Enterotoxin, subunit A                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhh.ee.......hhhhhh............eeeee..hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee....eeehhhhhhhhhhhh......hhhhhhhhhh.eeeee.ee....eeeeeeeeee....eeeeeeee............................eee....eehhhhhh.....----------....eeehhhh.... Sec.struct. author
             SAPs(SNPs) (1) --------------------------------E------------------------------------------------------------S------------------------------------------------------------------P-------------------------------I---M------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1prt A   2 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLEHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVVGACMARQAESSE----------EAMVLVYYESIAYSF 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        |-       221       231    
                                                                                                                                                                                                                                          210        221              


Chain B from PDB  Type:PROTEIN  Length:196
 aligned with TOX2_BORPE | P04978 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:196
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      
           TOX2_BORPE    31 GIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 226
               SCOP domains d1prtb2 B:4-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                     d1prtb1 B:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains 1prtB01 B:4-89 Pertussis Toxin, subunit B, domain 1                                   1prtB02 B:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee..hhhhhh.hhhhhhhhhh.....eee....eee......eee...........eeeeeeeeee......eeeeeeeeeeeeee.....eeeeeee..eeeeeeee..........hhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1prt B   4 GIVIPPQEQITQHGSPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain C from PDB  Type:PROTEIN  Length:196
 aligned with TOX3_BORPE | P04979 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:196
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
           TOX3_BORPE    32 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 227
               SCOP domains d1prtc2 C:4-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                     d1prtc1 C:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains 1prtC01 C:4-89 Pertussis Toxin, subunit B, domain 1                                   1prtC02 C:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eee..hhhhhh.hhhhhhhhhh.....eee....eee......eee...........eeeeeeeeee......eeeeeeeeeeeeee.....eeeeeee..eeeeeeee..........hhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1prt C   4 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain D from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1prtd_ D: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1prtD00 D:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeeee......eeeeeeeeee...........eeeeeeee.......hhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1prt D   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain E from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1prte_ E: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1prtE00 E:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeeee......eeeeeeeeee...........eeeeeeee.......hhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1prt E   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain F from PDB  Type:PROTEIN  Length:98
 aligned with TOX5_BORPE | P04981 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:98
                                    45        55        65        75        85        95       105       115       125        
           TOX5_BORPE    36 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE 133
               SCOP domains d1prtf_ F: Pertussis toxin S5 subunit                                                              SCOP domains
               CATH domains 1prtF00 F:2-99  [code=2.40.50.110, no name defined]                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeeeee..eeeeeeeee.....eeeeeee.......hhhhhhhhhhhhhhhh...eeeee.........eeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1prt F   2 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE  99
                                    11        21        31        41        51        61        71        81        91        


Chain G from PDB  Type:PROTEIN  Length:224
 aligned with TOX1_BORPE | P04977 from UniProtKB/Swiss-Prot  Length:269

    Alignment length:234
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265    
           TOX1_BORPE    36 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQAESSEAMAAWSERAGEAMVLVYYESIAYSF 269
               SCOP domains d1prtg_ G: Pertussis toxin, S1 subunit                                                                                                                                                                                                     SCOP domains
               CATH domains 1prtG00 G:2-235 Heat-Labile Enterotoxin, subunit A                                                                                                                                                                                         CATH domains
           Pfam domains (1) Pertussis_S1-1prtG01 G:2-234                                                                                                                                                                                                             - Pfam domains (1)
           Pfam domains (2) Pertussis_S1-1prtG02 G:2-234                                                                                                                                                                                                             - Pfam domains (2)
         Sec.struct. author ....eeeeee...hhhhhhh.ee.......hhhhhh............eeeee..hhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee....eeehhhhhhhhhhhh......hhhhhhhhhh.eeeee.ee....eeeeeeeeee....eeeeeeee............................eee....eehhhhhh.....----------....eeehhhh.... Sec.struct. author
             SAPs(SNPs) (1) --------------------------------E------------------------------------------------------------S------------------------------------------------------------------P-------------------------------I---M------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1prt G   2 DPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLEHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVVGACMARQAESSE----------EAMVLVYYESIAYSF 235
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201        |-       221       231    
                                                                                                                                                                                                                                          210        221              


Chain H from PDB  Type:PROTEIN  Length:196
 aligned with TOX2_BORPE | P04978 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:196
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      
           TOX2_BORPE    31 GIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 226
               SCOP domains d1prth2 H:4-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                     d1prth1 H:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains 1prtH01 H:4-89 Pertussis Toxin, subunit B, domain 1                                   1prtH02 H:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
           Pfam domains (1) APT-1prtH01 H:4-89                                                                    Pertussis_S2S3-1prtH03 H:90-198                                                                              - Pfam domains (1)
           Pfam domains (2) APT-1prtH02 H:4-89                                                                    Pertussis_S2S3-1prtH04 H:90-198                                                                              - Pfam domains (2)
         Sec.struct. author .......................eee..hhhhhh.hhhhhhhhhh.....eee....eee......eee...........eeeeeeeeee......eeeeeeeeeeeeee.....eeeeeee..eeeeeeee..........hhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1prt H   4 GIVIPPQEQITQHGSPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain I from PDB  Type:PROTEIN  Length:196
 aligned with TOX3_BORPE | P04979 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:196
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
           TOX3_BORPE    32 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 227
               SCOP domains d1prti2 I:4-89 Pertussis toxin, S2/S3 subunits, N-terminal domain                     d1prti1 I:90-199 Pertussis toxin S2/S3 subunits, C-terminal domain                                             SCOP domains
               CATH domains 1prtI01 I:4-89 Pertussis Toxin, subunit B, domain 1                                   1prtI02 I:90-199  [code=2.40.50.110, no name defined]                                                          CATH domains
           Pfam domains (1) APT-1prtI01 I:4-89                                                                    Pertussis_S2S3-1prtI03 I:90-198                                                                              - Pfam domains (1)
           Pfam domains (2) APT-1prtI02 I:4-89                                                                    Pertussis_S2S3-1prtI04 I:90-198                                                                              - Pfam domains (2)
         Sec.struct. author .......................eee..hhhhhh.hhhhhhhhhh.....eee....eee......eee...........eeeeeeeeee......eeeeeeeeeeeeee.....eeeeeee..eeeeeeee..........hhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1prt I   4 GIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain J from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1prtj_ J: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1prtJ00 J:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeeeeee......eeeeeeeeee...........eeeeeeee.......hhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1prt J   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain K from PDB  Type:PROTEIN  Length:110
 aligned with TOX4_BORPE | P0A3R5 from UniProtKB/Swiss-Prot  Length:152

    Alignment length:110
                                    52        62        72        82        92       102       112       122       132       142       152
           TOX4_BORPE    43 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 152
               SCOP domains d1prtk_ K: Pertussis toxin S4 subunit                                                                          SCOP domains
               CATH domains 1prtK00 K:1-110  [code=2.40.50.110, no name defined]                                                           CATH domains
           Pfam domains (1) Pertus-S4-tox-1prtK01 K:1-110                                                                                  Pfam domains (1)
           Pfam domains (2) Pertus-S4-tox-1prtK02 K:1-110                                                                                  Pfam domains (2)
           Pfam domains (3) Pertus-S4-tox-1prtK03 K:1-110                                                                                  Pfam domains (3)
           Pfam domains (4) Pertus-S4-tox-1prtK04 K:1-110                                                                                  Pfam domains (4)
         Sec.struct. author .....eeeeeeeeeeeeeee......eeeeeeeeee...........eeeeeeee.......hhhhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1prt K   1 DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain L from PDB  Type:PROTEIN  Length:98
 aligned with TOX5_BORPE | P04981 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:98
                                    45        55        65        75        85        95       105       115       125        
           TOX5_BORPE    36 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE 133
               SCOP domains d1prtl_ L: Pertussis toxin S5 subunit                                                              SCOP domains
               CATH domains 1prtL00 L:2-99  [code=2.40.50.110, no name defined]                                                CATH domains
           Pfam domains (1) -Pertus-S5-tox-1prtL01 L:3-99                                                                      Pfam domains (1)
           Pfam domains (2) -Pertus-S5-tox-1prtL02 L:3-99                                                                      Pfam domains (2)
         Sec.struct. author ...eeeeeeeeeeeeeeee..eeeeeeeee.....eeeeeee.......hhhhhhhhhhhhhhhh...eeeee.........eeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1prt L   2 LPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE  99
                                    11        21        31        41        51        61        71        81        91
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (3, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (5, 16)

Asymmetric Unit
(-)
Clan: ADP-ribosyl (56)
(-)
Clan: C_Lectin (98)
(-)
Family: APT (4)
(-)
Clan: no clan defined [family: Pertus-S4-tox] (2)
(-)
Clan: no clan defined [family: Pertus-S5-tox] (2)
(-)
Clan: no clan defined [family: Pertussis_S2S3] (2)

(-) Gene Ontology  (8, 25)

Asymmetric Unit(hide GO term definitions)
Chain A,G   (TOX1_BORPE | P04977)
molecular function
    GO:0003950    NAD+ ADP-ribosyltransferase activity    Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain B,H   (TOX2_BORPE | P04978)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain C,I   (TOX3_BORPE | P04979)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain D,E,J,K   (TOX4_BORPE | P0A3R5)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain F,L   (TOX5_BORPE | P04981)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TOX1_BORPE | P04977: 1bcp 1pto
        TOX2_BORPE | P04978: 1bcp 1pto
        TOX3_BORPE | P04979: 1bcp 1pto
        TOX4_BORPE | P0A3R5: 1bcp 1pto
        TOX5_BORPE | P04981: 1bcp 1pto

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1PRT)