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(-) Description

Title :  FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS
 
Authors :  Y. L. Hu, S. Faham, R. Roy, M. W. W. Adams, D. C. Rees
Date :  04 Dec 98  (Deposition) - 24 Mar 99  (Release) - 07 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Moco, Tungstoenzyme, Tungsten Containing Protein, Hyperthermophile, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Hu, S. Faham, R. Roy, M. W. Adams, D. C. Rees
Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus Furiosus: The 1. 85 A Resolution Crystal Structure And Its Mechanistic Implications.
J. Mol. Biol. V. 286 899 1999
PubMed-ID: 10024458  |  Reference-DOI: 10.1006/JMBI.1998.2488
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE)
    Atcc: DSM 3638
    Chains: A, B, C, D
    Collection: DSM 3638
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1PTT4Ligand/IonTUNGSTOPTERIN
2SF44Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
011AAUTHORASP A:333FIRST MOLYBDOPTERIN BINDING MOTIF
021BAUTHORGLU B:486FIRST MOLYBDOPTERIN BINDING MOTIF
031CAUTHORASP C:333FIRST MOLYBDOPTERIN BINDING MOTIF
041DAUTHORASP D:333FIRST MOLYBDOPTERIN BINDING MOTIF
052AAUTHORGLU A:486SECOND MOLYBDOPTERIN BINDING MOTIF
062BAUTHORGLU B:486SECOND MOLYBDOPTERIN BINDING MOTIF
072CAUTHORGLU C:486SECOND MOLYBDOPTERIN BINDING MOTIF
082DAUTHORGLU D:486SECOND MOLYBDOPTERIN BINDING MOTIF
09AC1SOFTWARESER A:72 , LYS A:75 , ARG A:180 , GLY A:283 , CYS A:284 , CYS A:287 , MET A:289 , CYS A:291 , CYS A:491 , PTT A:800BINDING SITE FOR RESIDUE SF4 A 700
10AC2SOFTWARESER B:72 , LYS B:75 , ARG B:180 , GLY B:283 , CYS B:284 , CYS B:287 , MET B:289 , CYS B:291 , CYS B:491 , PTT B:801BINDING SITE FOR RESIDUE SF4 B 701
11AC3SOFTWARESER C:72 , LYS C:75 , ARG C:180 , GLY C:283 , CYS C:284 , CYS C:287 , MET C:289 , PRO C:290 , CYS C:291 , CYS C:491 , PTT C:802BINDING SITE FOR RESIDUE SF4 C 702
12AC4SOFTWARESER D:72 , LYS D:75 , ARG D:180 , GLY D:283 , CYS D:284 , CYS D:287 , MET D:289 , PRO D:290 , CYS D:291 , CYS D:491 , PTT D:803BINDING SITE FOR RESIDUE SF4 D 703
13AC5SOFTWARELYS A:75 , GLY A:91 , ASN A:92 , LEU A:93 , GLY A:94 , GLY A:179 , ARG A:180 , ALA A:181 , ALA A:182 , GLY A:183 , ARG A:184 , THR A:240 , GLU A:304 , ASP A:306 , TYR A:307 , GLU A:308 , ASN A:309 , ASP A:333 , MET A:337 , ASP A:338 , THR A:339 , HIS A:436 , HIS A:437 , LYS A:438 , PHE A:485 , GLU A:486 , ALA A:490 , CYS A:491 , ARG A:492 , LEU A:493 , SF4 A:700 , HOH A:806 , HOH A:808 , HOH A:809 , HOH A:814 , HOH A:1082 , HOH A:1083 , HOH A:1084 , HOH A:1085BINDING SITE FOR RESIDUE PTT A 800
14AC6SOFTWARELYS B:75 , GLY B:91 , ASN B:92 , LEU B:93 , GLY B:94 , GLY B:179 , ARG B:180 , ALA B:181 , ALA B:182 , GLY B:183 , ARG B:184 , THR B:240 , GLU B:304 , ASP B:306 , TYR B:307 , GLU B:308 , ASN B:309 , ASP B:333 , MET B:337 , ASP B:338 , THR B:339 , HIS B:436 , HIS B:437 , LYS B:438 , PHE B:485 , GLU B:486 , ALA B:490 , CYS B:491 , ARG B:492 , SF4 B:701 , HOH B:803 , HOH B:806 , HOH B:808 , HOH B:809 , HOH B:1116 , HOH B:1117 , HOH B:1118 , HOH B:1119BINDING SITE FOR RESIDUE PTT B 801
15AC7SOFTWARELYS C:75 , GLY C:91 , ASN C:92 , LEU C:93 , GLY C:94 , GLY C:179 , ARG C:180 , ALA C:181 , ALA C:182 , GLY C:183 , ARG C:184 , THR C:240 , GLU C:304 , ASP C:306 , TYR C:307 , GLU C:308 , ASN C:309 , ASP C:333 , MET C:337 , ASP C:338 , THR C:339 , HIS C:436 , HIS C:437 , LYS C:438 , PHE C:485 , GLU C:486 , ALA C:490 , CYS C:491 , ARG C:492 , LEU C:493 , SF4 C:702 , HOH C:806 , HOH C:810 , HOH C:816 , HOH C:839 , HOH C:1192 , HOH C:1193 , HOH C:1194 , HOH C:1195BINDING SITE FOR RESIDUE PTT C 802
16AC8SOFTWARELYS D:75 , GLY D:91 , ASN D:92 , LEU D:93 , GLY D:94 , GLY D:179 , ARG D:180 , ALA D:181 , ALA D:182 , GLY D:183 , ARG D:184 , THR D:240 , GLU D:304 , ASP D:306 , TYR D:307 , GLU D:308 , ASN D:309 , ALA D:332 , ASP D:333 , MET D:337 , ASP D:338 , THR D:339 , HIS D:436 , HIS D:437 , LYS D:438 , PHE D:485 , GLU D:486 , ALA D:490 , CYS D:491 , ARG D:492 , SF4 D:703 , HOH D:806 , HOH D:808 , HOH D:812 , HOH D:813 , HOH D:1153 , HOH D:1154 , HOH D:1155 , HOH D:1156BINDING SITE FOR RESIDUE PTT D 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1B25)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:488 -Thr A:489
2Leu B:488 -Thr B:489
3Leu C:488 -Thr C:489
4Leu D:488 -Thr D:489

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1B25)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1B25)

(-) Exons   (0, 0)

(no "Exon" information available for 1B25)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:611
 aligned with O93738_9EURY | O93738 from UniProtKB/TrEMBL  Length:619

    Alignment length:619
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610         
         O93738_9EURY     1 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 619
               SCOP domains d1b25a2 A:1-210 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                            d1b25a1 A:211-619 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1b25A01 A:1-209 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                          1b25A03 A:210-238,A:417-608  1b25A02 A:239-416 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                 1b25A03 A:210-238,A:417-608 Aldehyde         Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                             ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeee..hhhhhhh..hhhhhhhhhhhh............eeee.............eeeeeee......eeeeeee.hhhhhhhh....eeeee......eeeeee..eeeeee........hhhhhhhhhhhh....eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh................hhhh.hhhhhhheeeee.........eeeee.....eeee.hhhhhhh.hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh....hhhhhhhh.hhhhhhhh..hhh.................hhhhhhhhh............hhhhh......--------......hhhhhhhhhhhhhh..hhhh.....hhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhh...hhhhh..............hhhhhhhhhhhhhhh.........hhhhhh...hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b25 A   1 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIE--------YKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 619
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450  |      - |     470       480       490       500       510       520       530       540       550       560       570       580       590       600       610         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              453      462                                                                                                                                                             


Chain A from PDB  Type:PROTEIN  Length:611
 aligned with Q8U1K3_PYRFU | Q8U1K3 from UniProtKB/TrEMBL  Length:627

    Alignment length:619
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618         
         Q8U1K3_PYRFU     9 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 627
               SCOP domains d1b25a2 A:1-210 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                            d1b25a1 A:211-619 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1b25A01 A:1-209 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                          1b25A03 A:210-238,A:417-608  1b25A02 A:239-416 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                 1b25A03 A:210-238,A:417-608 Aldehyde         Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                             ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeee..hhhhhhh..hhhhhhhhhhhh............eeee.............eeeeeee......eeeeeee.hhhhhhhh....eeeee......eeeeee..eeeeee........hhhhhhhhhhhh....eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh................hhhh.hhhhhhheeeee.........eeeee.....eeee.hhhhhhh.hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh....hhhhhhhh.hhhhhhhh..hhh.................hhhhhhhhh............hhhhh......--------......hhhhhhhhhhhhhh..hhhh.....hhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhh...hhhhh..............hhhhhhhhhhhhhhh.........hhhhhh...hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b25 A   1 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIE--------YKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 619
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450  |      - |     470       480       490       500       510       520       530       540       550       560       570       580       590       600       610         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              453      462                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:611
 aligned with Q8U1K3_PYRFU | Q8U1K3 from UniProtKB/TrEMBL  Length:627

    Alignment length:619
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618         
         Q8U1K3_PYRFU     9 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 627
               SCOP domains d1b25b2 B:1-210 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                            d1b25b1 B:211-619 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1b25B01 B:1-209 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                          1b25B03 B:210-238,B:417-608  1b25B02 B:239-416 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                 1b25B03 B:210-238,B:417-608 Aldehyde         Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                             ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeee..hhhhhhh..hhhhhhhhhhhh............eeee.............eeeeeee......eeeeeee.hhhhhhhh....eeeee......eeeeee..eeeeee........hhhhhhhhhhhh....eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh................hhhh.hhhhhhheeeee.........eeeee.....eeee.hhhhhhh.hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh...hhhhhhhhh.hhhhhhhh..hhh.................hhhhhhhhh............hhhhh......--------......hhhhhhhhhhhhhh..hhhh.....hhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhh...hhhhh..............hhhhhhhhhhhhhhh.........hhhhhh...hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b25 B   1 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIE--------YKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 619
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450  |      - |     470       480       490       500       510       520       530       540       550       560       570       580       590       600       610         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              453      462                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:611
 aligned with Q8U1K3_PYRFU | Q8U1K3 from UniProtKB/TrEMBL  Length:627

    Alignment length:619
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618         
         Q8U1K3_PYRFU     9 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 627
               SCOP domains d1b25c2 C:1-210 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                            d1b25c1 C:211-619 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1b25C01 C:1-209 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                          1b25C03 C:210-238,C:417-608  1b25C02 C:239-416 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                 1b25C03 C:210-238,C:417-608 Aldehyde         Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                             ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeee..hhhhhhh..hhhhhhhhhhhh............eeee.............eeeeeee......eeeeeee.hhhhhhhh....eeeee......eeeeee..eeeeee........hhhhhhhhhhhh....eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh................hhhh.hhhhhhheeeee.........eeeee.....eeee.hhhhhhh.hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh...hhhhhhhhh.hhhhhhhh..hhh.................hhhhhhhhh............hhhhh......--------......hhhhhhhhhhhhhh..hhhh.....hhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhh...hhhhh..............hhhhhhhhhhhhhhh.........hhhhhh...hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b25 C   1 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIE--------YKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 619
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450  |      - |     470       480       490       500       510       520       530       540       550       560       570       580       590       600       610         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              453      462                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:611
 aligned with Q8U1K3_PYRFU | Q8U1K3 from UniProtKB/TrEMBL  Length:627

    Alignment length:619
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618         
         Q8U1K3_PYRFU     9 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 627
               SCOP domains d1b25d2 D:1-210 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                            d1b25d1 D:211-619 Formaldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1b25D01 D:1-209 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                          1b25D03 D:210-238,D:417-608  1b25D02 D:239-416 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                 1b25D03 D:210-238,D:417-608 Aldehyde         Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                             ----------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeee..hhhhhhh..hhhhhhhhhhhh............eeee.............eeeeeee......eeeeeee.hhhhhhhh....eeeee......eeeeee..eeeeee........hhhhhhhhhhhh....eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh................hhhh.hhhhhhheeeee.........eeeee.....eeee.hhhhhhh.hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh............hhhhhhhhhhhh...hhhhhhhhh.hhhhhhhh..hhh.................hhhhhhhhh............hhhhh......--------......hhhhhhhhhhhhhh..hhhh.....hhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhh...hhhhh..............hhhhhhhhhhhhhhh.........hhhhhh...hhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b25 D   1 MYGWWGRILRVNLTTGEVKVQEYPEEVAKKFIGGRGLAAWILWNEARGVEPLSPENKLIFAAGPFNGLPTPSGGKLVVAAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKPVYIYIEDDNVSILSAEGLWGKTTFETERELKEIHGKNVGVLTIGPAGENLVKYAVVISQEGRAAGRPGMGAVMGSKKLKAVVIRGTKEIPVADKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMPCGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGAKQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTAPIE--------YKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIPELEKVTNLE 619
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450  |      - |     470       480       490       500       510       520       530       540       550       560       570       580       590       600       610         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              453      462
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1B25)

(-) Gene Ontology  (7, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O93738_9EURY | O93738)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016625    oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an iron-sulfur protein.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A,B,C,D   (Q8U1K3_PYRFU | Q8U1K3)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016625    oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an iron-sulfur protein.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  Q8U1K3_PYRFU | Q8U1K3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O93738_9EURY | O93738: 1b4n
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        Q8U1K3_PYRFU | Q8U1K3: 1b4n

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1B25)