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1B25
Asym. Unit
Info
Asym.Unit (422 KB)
Biol.Unit 1 (415 KB)
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(1)
Title
:
FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS
Authors
:
Y. L. Hu, S. Faham, R. Roy, M. W. W. Adams, D. C. Rees
Date
:
04 Dec 98 (Deposition) - 24 Mar 99 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Moco, Tungstoenzyme, Tungsten Containing Protein, Hyperthermophile, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Hu, S. Faham, R. Roy, M. W. Adams, D. C. Rees
Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus Furiosus: The 1. 85 A Resolution Crystal Structure And Its Mechanistic Implications.
J. Mol. Biol. V. 286 899 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: TUNGSTOPTERIN (PTTa)
1b: TUNGSTOPTERIN (PTTb)
1c: TUNGSTOPTERIN (PTTc)
1d: TUNGSTOPTERIN (PTTd)
2a: IRON/SULFUR CLUSTER (SF4a)
2b: IRON/SULFUR CLUSTER (SF4b)
2c: IRON/SULFUR CLUSTER (SF4c)
2d: IRON/SULFUR CLUSTER (SF4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PTT
4
Ligand/Ion
TUNGSTOPTERIN
2
SF4
4
Ligand/Ion
IRON/SULFUR CLUSTER
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: 1A (AUTHOR)
02: 1B (AUTHOR)
03: 1C (AUTHOR)
04: 1D (AUTHOR)
05: 2A (AUTHOR)
06: 2B (AUTHOR)
07: 2C (AUTHOR)
08: 2D (AUTHOR)
09: AC1 (SOFTWARE)
10: AC2 (SOFTWARE)
11: AC3 (SOFTWARE)
12: AC4 (SOFTWARE)
13: AC5 (SOFTWARE)
14: AC6 (SOFTWARE)
15: AC7 (SOFTWARE)
16: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
1A
AUTHOR
ASP A:333
FIRST MOLYBDOPTERIN BINDING MOTIF
02
1B
AUTHOR
GLU B:486
FIRST MOLYBDOPTERIN BINDING MOTIF
03
1C
AUTHOR
ASP C:333
FIRST MOLYBDOPTERIN BINDING MOTIF
04
1D
AUTHOR
ASP D:333
FIRST MOLYBDOPTERIN BINDING MOTIF
05
2A
AUTHOR
GLU A:486
SECOND MOLYBDOPTERIN BINDING MOTIF
06
2B
AUTHOR
GLU B:486
SECOND MOLYBDOPTERIN BINDING MOTIF
07
2C
AUTHOR
GLU C:486
SECOND MOLYBDOPTERIN BINDING MOTIF
08
2D
AUTHOR
GLU D:486
SECOND MOLYBDOPTERIN BINDING MOTIF
09
AC1
SOFTWARE
SER A:72 , LYS A:75 , ARG A:180 , GLY A:283 , CYS A:284 , CYS A:287 , MET A:289 , CYS A:291 , CYS A:491 , PTT A:800
BINDING SITE FOR RESIDUE SF4 A 700
10
AC2
SOFTWARE
SER B:72 , LYS B:75 , ARG B:180 , GLY B:283 , CYS B:284 , CYS B:287 , MET B:289 , CYS B:291 , CYS B:491 , PTT B:801
BINDING SITE FOR RESIDUE SF4 B 701
11
AC3
SOFTWARE
SER C:72 , LYS C:75 , ARG C:180 , GLY C:283 , CYS C:284 , CYS C:287 , MET C:289 , PRO C:290 , CYS C:291 , CYS C:491 , PTT C:802
BINDING SITE FOR RESIDUE SF4 C 702
12
AC4
SOFTWARE
SER D:72 , LYS D:75 , ARG D:180 , GLY D:283 , CYS D:284 , CYS D:287 , MET D:289 , PRO D:290 , CYS D:291 , CYS D:491 , PTT D:803
BINDING SITE FOR RESIDUE SF4 D 703
13
AC5
SOFTWARE
LYS A:75 , GLY A:91 , ASN A:92 , LEU A:93 , GLY A:94 , GLY A:179 , ARG A:180 , ALA A:181 , ALA A:182 , GLY A:183 , ARG A:184 , THR A:240 , GLU A:304 , ASP A:306 , TYR A:307 , GLU A:308 , ASN A:309 , ASP A:333 , MET A:337 , ASP A:338 , THR A:339 , HIS A:436 , HIS A:437 , LYS A:438 , PHE A:485 , GLU A:486 , ALA A:490 , CYS A:491 , ARG A:492 , LEU A:493 , SF4 A:700 , HOH A:806 , HOH A:808 , HOH A:809 , HOH A:814 , HOH A:1082 , HOH A:1083 , HOH A:1084 , HOH A:1085
BINDING SITE FOR RESIDUE PTT A 800
14
AC6
SOFTWARE
LYS B:75 , GLY B:91 , ASN B:92 , LEU B:93 , GLY B:94 , GLY B:179 , ARG B:180 , ALA B:181 , ALA B:182 , GLY B:183 , ARG B:184 , THR B:240 , GLU B:304 , ASP B:306 , TYR B:307 , GLU B:308 , ASN B:309 , ASP B:333 , MET B:337 , ASP B:338 , THR B:339 , HIS B:436 , HIS B:437 , LYS B:438 , PHE B:485 , GLU B:486 , ALA B:490 , CYS B:491 , ARG B:492 , SF4 B:701 , HOH B:803 , HOH B:806 , HOH B:808 , HOH B:809 , HOH B:1116 , HOH B:1117 , HOH B:1118 , HOH B:1119
BINDING SITE FOR RESIDUE PTT B 801
15
AC7
SOFTWARE
LYS C:75 , GLY C:91 , ASN C:92 , LEU C:93 , GLY C:94 , GLY C:179 , ARG C:180 , ALA C:181 , ALA C:182 , GLY C:183 , ARG C:184 , THR C:240 , GLU C:304 , ASP C:306 , TYR C:307 , GLU C:308 , ASN C:309 , ASP C:333 , MET C:337 , ASP C:338 , THR C:339 , HIS C:436 , HIS C:437 , LYS C:438 , PHE C:485 , GLU C:486 , ALA C:490 , CYS C:491 , ARG C:492 , LEU C:493 , SF4 C:702 , HOH C:806 , HOH C:810 , HOH C:816 , HOH C:839 , HOH C:1192 , HOH C:1193 , HOH C:1194 , HOH C:1195
BINDING SITE FOR RESIDUE PTT C 802
16
AC8
SOFTWARE
LYS D:75 , GLY D:91 , ASN D:92 , LEU D:93 , GLY D:94 , GLY D:179 , ARG D:180 , ALA D:181 , ALA D:182 , GLY D:183 , ARG D:184 , THR D:240 , GLU D:304 , ASP D:306 , TYR D:307 , GLU D:308 , ASN D:309 , ALA D:332 , ASP D:333 , MET D:337 , ASP D:338 , THR D:339 , HIS D:436 , HIS D:437 , LYS D:438 , PHE D:485 , GLU D:486 , ALA D:490 , CYS D:491 , ARG D:492 , SF4 D:703 , HOH D:806 , HOH D:808 , HOH D:812 , HOH D:813 , HOH D:1153 , HOH D:1154 , HOH D:1155 , HOH D:1156
BINDING SITE FOR RESIDUE PTT D 803
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1b25a1 (A:211-619)
1b: SCOP_d1b25b1 (B:211-619)
1c: SCOP_d1b25c1 (C:211-619)
1d: SCOP_d1b25d1 (D:211-619)
2a: SCOP_d1b25a2 (A:1-210)
2b: SCOP_d1b25b2 (B:1-210)
2c: SCOP_d1b25c2 (C:1-210)
2d: SCOP_d1b25d2 (D:1-210)
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)
(
)
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)
(
)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Aldehyde ferredoxin oxidoreductase, C-terminal domains
(3)
Superfamily
:
Aldehyde ferredoxin oxidoreductase, C-terminal domains
(3)
Family
:
Aldehyde ferredoxin oxidoreductase, C-terminal domains
(3)
Protein domain
:
Formaldehyde ferredoxin oxidoreductase
(2)
Pyrococcus furiosus [TaxId: 2261]
(2)
1a
d1b25a1
A:211-619
1b
d1b25b1
B:211-619
1c
d1b25c1
C:211-619
1d
d1b25d1
D:211-619
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Aldehyde ferredoxin oxidoreductase, N-terminal domain
(3)
Superfamily
:
Aldehyde ferredoxin oxidoreductase, N-terminal domain
(3)
Family
:
Aldehyde ferredoxin oxidoreductase, N-terminal domain
(3)
Protein domain
:
Formaldehyde ferredoxin oxidoreductase
(2)
Pyrococcus furiosus [TaxId: 2261]
(2)
2a
d1b25a2
A:1-210
2b
d1b25b2
B:1-210
2c
d1b25c2
C:1-210
2d
d1b25d2
D:1-210
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1b25A01 (A:1-209)
1b: CATH_1b25B01 (B:1-209)
1c: CATH_1b25C01 (C:1-209)
1d: CATH_1b25D01 (D:1-209)
2a: CATH_1b25A02 (A:239-416)
2b: CATH_1b25B02 (B:239-416)
2c: CATH_1b25C02 (C:239-416)
2d: CATH_1b25D02 (D:239-416)
3a: CATH_1b25A03 (A:210-238,A:417-608)
3b: CATH_1b25B03 (B:210-238,B:417-608)
3c: CATH_1b25C03 (C:210-238,C:417-608)
3d: CATH_1b25D03 (D:210-238,D:417-608)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Aldehyde Ferredoxin Oxidoreductase; A, domain 1
(3)
Homologous Superfamily
:
Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1
(3)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
1a
1b25A01
A:1-209
1b
1b25B01
B:1-209
1c
1b25C01
C:1-209
1d
1b25D01
D:1-209
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2
(3)
Homologous Superfamily
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2
(3)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
2a
1b25A02
A:239-416
2b
1b25B02
B:239-416
2c
1b25C02
C:239-416
2d
1b25D02
D:239-416
Topology
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3
(3)
Homologous Superfamily
:
Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3
(3)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
3a
1b25A03
A:210-238,A:417-608
3b
1b25B03
B:210-238,B:417-608
3c
1b25C03
C:210-238,C:417-608
3d
1b25D03
D:210-238,D:417-608
[
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Pfam Domains
(0, 0)
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all PFAM domains
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