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(-) Description

Title :  THE HIGH RESOLUTION STRUCTURE OF ANNEXIN III SHOWS DIFFERENCES WITH ANNEXIN V
 
Authors :  B. Favier-Perron, A. Lewit-Bentley, F. Russo-Marie
Date :  21 Aug 95  (Deposition) - 08 Mar 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A
Keywords :  Annexin Family, Calcium/Phospholipid-Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Favier-Perron, A. Lewit-Bentley, F. Russo-Marie
The High-Resolution Crystal Structure Of Human Annexin Iii Shows Subtle Differences With Annexin V.
Biochemistry V. 35 1740 1996
PubMed-ID: 8639653  |  Reference-DOI: 10.1021/BI952092O
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANNEXIN III
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System GeneHUMAN ANNEXIN III
    Expression System PlasmidPGEX2T
    Expression System Taxid562
    GeneHUMAN ANNEXIN III
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHUMAN RECOMBINANT
    Other Details - SourcePREPARED AS A GST-FUSION, THEN CLEAVED YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:32 , GLY A:34 , GLY A:36 , THR A:37 , ASP A:76BINDING SITE FOR RESIDUE CA A 351
2AC2SOFTWAREMET A:104 , GLY A:106 , GLY A:108 , THR A:109 , GLU A:148BINDING SITE FOR RESIDUE CA A 352
3AC3SOFTWAREGLY A:187 , ARG A:190 , GLY A:192 , GLU A:232 , HOH A:406 , HOH A:407BINDING SITE FOR RESIDUE CA A 353
4AC4SOFTWARELYS A:230 , LEU A:233 , GLU A:238 , HOH A:580BINDING SITE FOR RESIDUE CA A 354
5AC5SOFTWARETHR A:193 , GLU A:195 , HOH A:458 , HOH A:603BINDING SITE FOR RESIDUE CA A 355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AXN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1AXN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 4)

Asymmetric/Biological Unit (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_013914S19NANXA3_HUMANPolymorphism5951AS20N
2UniProtVAR_013915I219NANXA3_HUMANPolymorphism5948AI220N
3UniProtVAR_013916P251LANXA3_HUMANPolymorphism5949AP252L
4UniProtVAR_013917F291SANXA3_HUMANPolymorphism5941AF292S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ANNEXINPS00223 Annexins repeated domain signature.ANXA3_HUMAN35-87
107-159
191-243
266-318
  4A:36-88
A:108-160
A:192-244
A:267-319

(-) Exons   (12, 12)

Asymmetric/Biological Unit (12, 12)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002649081aENSE00001522300chr4:79472673-79473013341ANXA3_HUMAN-00--
1.4ENST000002649084ENSE00002149040chr4:79475590-7947564253ANXA3_HUMAN1-551A:2-65
1.6ENST000002649086ENSE00001126555chr4:79494334-7949442188ANXA3_HUMAN6-35301A:7-3630
1.7ENST000002649087ENSE00000428996chr4:79500181-7950027595ANXA3_HUMAN35-66321A:36-6732
1.8aENST000002649088aENSE00000726115chr4:79503331-79503444114ANXA3_HUMAN67-104381A:68-10538
1.9ENST000002649089ENSE00002196569chr4:79507414-7950750491ANXA3_HUMAN105-135311A:106-13631
1.10bENST0000026490810bENSE00000935674chr4:79512698-7951277780ANXA3_HUMAN135-161271A:136-16227
1.11ENST0000026490811ENSE00000935675chr4:79516535-7951659157ANXA3_HUMAN162-180191A:163-18119
1.12ENST0000026490812ENSE00002185654chr4:79516948-7951704194ANXA3_HUMAN181-212321A:182-21332
1.13bENST0000026490813bENSE00000726142chr4:79518473-7951856896ANXA3_HUMAN212-244331A:213-24533
1.14ENST0000026490814ENSE00001025502chr4:79522664-7952272259ANXA3_HUMAN244-263201A:245-26420
1.15bENST0000026490815bENSE00001139786chr4:79525431-79525553123ANXA3_HUMAN264-304411A:265-30541
1.16dENST0000026490816dENSE00002057276chr4:79531210-79531575366ANXA3_HUMAN305-323191A:306-32419

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:323
 aligned with ANXA3_HUMAN | P12429 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320   
          ANXA3_HUMAN     1 MASIWVGHRGTVRDYPDFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKICGGDD 323
               SCOP domains d1axna_ A: Annexin III                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------1axnA01 A:18-90  [code=1.10.220.10, no name defined]                     1axnA02 A:91-164  [code=1.10.220.10, no name defined]                     1axnA03 A:165-250  [code=1.10.220.10, no name defined]                                1axnA04 A:251-322  [code=1.10.220.10, no name defined]                  -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhh..........hhhhhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------N-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N-------------------------------L---------------------------------------S-------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------ANNEXIN  PDB: A:36-88 UniProt: 35-87                 -------------------ANNEXIN  PDB: A:108-160 UniProt: 107-159             -------------------------------ANNEXIN  PDB: A:192-244 UniProt: 191-243             ----------------------ANNEXIN  PDB: A:267-319 UniProt: 266-318             ----- PROSITE
           Transcript 1 (1) 1.4  Exon 1.6  PDB: A:7-36         -------------------------------Exon 1.8a  PDB: A:68-105              ------------------------------Exon 1.10b  PDB: A:136-162 Exon 1.11          Exon 1.12  PDB: A:182-213       -------------------------------Exon 1.14           Exon 1.15b  PDB: A:265-305               Exon 1.16d          Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.7  PDB: A:36-67          --------------------------------------Exon 1.9  PDB: A:106-136       ----------------------------------------------------------------------------Exon 1.13b  PDB: A:213-245       ------------------------------------------------------------------------------- Transcript 1 (2)
                 1axn A   2 SASIWVGHRGTVRDYPDFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKKHYGYSLYSAIKSDTSGDYEITLLKICGGDD 324
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AXN)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ANXA3_HUMAN | P12429)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005544    calcium-dependent phospholipid binding    Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.
    GO:0048306    calcium-dependent protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
    GO:0019834    phospholipase A2 inhibitor activity    Stops, prevents or reduces the activity of the enzyme phospholipase A2.
    GO:0004859    phospholipase inhibitor activity    Stops, prevents or reduces the activity of a phospholipase, an enzyme that catalyzes of the hydrolysis of a phospholipid.
biological process
    GO:0031100    animal organ regeneration    The regrowth of a lost or destroyed animal organ.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0021766    hippocampus development    The progression of the hippocampus over time from its initial formation until its mature state.
    GO:0043086    negative regulation of catalytic activity    Any process that stops or reduces the activity of an enzyme.
    GO:0043312    neutrophil degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
    GO:0006909    phagocytosis    An endocytosis process that results in the engulfment of external particulate material by phagocytes. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.
    GO:0051054    positive regulation of DNA metabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0010595    positive regulation of endothelial cell migration    Any process that increases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
    GO:0051091    positive regulation of sequence-specific DNA binding transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of a transcription factor, any factor involved in the initiation or regulation of transcription.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0070848    response to growth factor    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0030670    phagocytic vesicle membrane    The lipid bilayer surrounding a phagocytic vesicle.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0042581    specific granule    Granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase.

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 Related Entries

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        ANXA3_HUMAN | P124291aii

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