1AUH - JenaLib

Title :   THEORETICAL MODEL OF THE REV BINDING ELEMENT (RBE, 30 RIBONUCLEOTIDE FRAGMENT) OF HUMAN IMMUNODEFICIENCY VIRUS-1 COMPLEXED WITH THE REV PEPTIDE

Authors :   J. Srinivasan, F. Leclerc, W. Xu, A. D. Ellington, R. J. Cedergren

Date :   27 Aug 97 (Deposition) - 28 Jan 98 (Release) - 28 Jan 98 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : A,B

Keywords :   Rna/Transcription Regulation Protein, Complex (Rna/Peptide) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Srinivasan, F. Leclerc, W. Xu, A. D. Ellington, R. Cedergren
A Docking And Modelling Strategy For Peptide-Rna Complexes: Applications To Biv Tat-Tar And Hiv Rev-Rbe
Folding Des. V. 1 463 1996
PubMed: search
(for further references see the PDB file header)

Compounds

Molecule 1 - REV BINDING ELEMENT
	Chains	:	A
	Engineered	:	YES
	Fragment	:	30 RIBONUCLEOTIDE FRAGMENT OF THE REV RESPONSIVE ELEMENT
	Synonym	:	REV RESPONSE ELEMENT
	Synthetic	:	YES

Molecule 2 - REV PEPTIDE
	Chains	:	B
	Fragment	:	RESIDUES 1-17
	Organism Common	:	HIV-1
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
	Strain	:	1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Theoretical Model

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Chain A from PDB  Type:RNA  Length:30
                                                             
                  1auh A 43 GGUGGGCGCAGCUUCGGCUGACGGUACACC 77
                                    52     || 67        77
                                          58|             
                                           64

Chain B from PDB  Type:PROTEIN  Length:18
 aligned with REV_HV1W2 | P05866 from UniProtKB/Swiss-Prot  Length:90

    Alignment length:18
                                    17        
             REV_HV1W2    8 TRQARRNRRRRWRERQRQ 25
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                  1auh B  1 TRQARRNRRRRWRERQRx 18
                                    10       |
                                            18-NH2

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

Theoretical Model(hide GO term definitions)

Chain B (REV_HV1W2 | P05866)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0051028	mRNA transport	The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044196	host cell nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic host cells.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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