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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   RECOMBINANT HORSERADISH PEROXIDASE C1A

Authors :   M. Gajhede, D. J. Schuller, A. Henriksen, A. T. Smith, T. L. Poulos

Date :   14 Aug 97 (Deposition) - 04 Feb 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Peroxidase, Oxidoreductase, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Gajhede, D. J. Schuller, A. Henriksen, A. T. Smith, T. L. Poulos
Crystal Structure Of Horseradish Peroxidase C At 2. 15 A Resolution.
Nat. Struct. Biol. V. 4 1032 1997
PubMed-ID: 9406554 | Reference-DOI: 10.1038/NSB1297-1032
(for further references see the PDB file header)

Molecule 1 - PEROXIDASE C1A
	Chains	:	A, B, C, D, E, F
	EC Number	:	1.11.1.7
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	ARMORACIA RUSTICANA
	Organism Taxid	:	3704
	Synonym	:	HORSERADISH PEROXIDASE C1A, HRP C

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 18)

No.	Name	Count	Type	Full Name
1	CA	12	Ligand/Ion	CALCIUM ION
2	HEM	6	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230	BINDING SITE FOR RESIDUE CA A 351
02	AC2	SOFTWARE	ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:366	BINDING SITE FOR RESIDUE CA A 352
03	AC3	SOFTWARE	THR B:171 , ASP B:222 , THR B:225 , ILE B:228 , ASP B:230	BINDING SITE FOR RESIDUE CA B 351
04	AC4	SOFTWARE	ASP B:43 , VAL B:46 , GLY B:48 , ASP B:50 , SER B:52 , HOH B:368	BINDING SITE FOR RESIDUE CA B 352
05	AC5	SOFTWARE	THR C:171 , ASP C:222 , THR C:225 , ILE C:228 , ASP C:230	BINDING SITE FOR RESIDUE CA C 351
06	AC6	SOFTWARE	ASP C:43 , VAL C:46 , GLY C:48 , ASP C:50 , SER C:52 , HOH C:367	BINDING SITE FOR RESIDUE CA C 352
07	AC7	SOFTWARE	THR D:171 , ASP D:222 , THR D:225 , ILE D:228 , ASP D:230	BINDING SITE FOR RESIDUE CA D 351
08	AC8	SOFTWARE	ASP D:43 , VAL D:46 , GLY D:48 , ASP D:50 , SER D:52 , HOH D:368	BINDING SITE FOR RESIDUE CA D 352
09	AC9	SOFTWARE	THR E:171 , ASP E:222 , THR E:225 , ILE E:228 , ASP E:230	BINDING SITE FOR RESIDUE CA E 351
10	BC1	SOFTWARE	ASP E:43 , VAL E:46 , GLY E:48 , ASP E:50 , SER E:52 , HOH E:368	BINDING SITE FOR RESIDUE CA E 352
11	BC2	SOFTWARE	THR F:171 , ASP F:222 , THR F:225 , ILE F:228 , ASP F:230	BINDING SITE FOR RESIDUE CA F 351
12	BC3	SOFTWARE	ASP F:43 , VAL F:46 , GLY F:48 , ASP F:50 , SER F:52 , HOH F:367	BINDING SITE FOR RESIDUE CA F 352
13	BC4	SOFTWARE	ARG A:31 , ALA A:34 , SER A:35 , ARG A:38 , PHE A:41 , SER A:73 , ALA A:140 , PRO A:141 , LEU A:166 , GLY A:169 , HIS A:170 , PHE A:172 , GLY A:173 , LYS A:174 , ASN A:175 , GLN A:176 , PHE A:179 , PHE A:221 , SER A:246 , HOH A:391	BINDING SITE FOR RESIDUE HEM A 350
14	BC5	SOFTWARE	ARG B:31 , ALA B:34 , SER B:35 , ARG B:38 , PHE B:41 , SER B:73 , ALA B:140 , PRO B:141 , LEU B:166 , GLY B:169 , HIS B:170 , PHE B:172 , GLY B:173 , LYS B:174 , ASN B:175 , GLN B:176 , PHE B:179 , PHE B:221 , SER B:246 , HOH B:393	BINDING SITE FOR RESIDUE HEM B 350
15	BC6	SOFTWARE	ARG C:31 , ALA C:34 , SER C:35 , ARG C:38 , PHE C:41 , SER C:73 , ALA C:140 , PRO C:141 , LEU C:166 , GLY C:169 , HIS C:170 , PHE C:172 , GLY C:173 , LYS C:174 , ASN C:175 , GLN C:176 , PHE C:179 , PHE C:221 , SER C:246 , HOH C:392	BINDING SITE FOR RESIDUE HEM C 350
16	BC7	SOFTWARE	ARG D:31 , ALA D:34 , SER D:35 , ARG D:38 , PHE D:41 , SER D:73 , ALA D:140 , PRO D:141 , LEU D:166 , GLY D:169 , HIS D:170 , PHE D:172 , GLY D:173 , LYS D:174 , ASN D:175 , GLN D:176 , PHE D:179 , PHE D:221 , SER D:246 , HOH D:393	BINDING SITE FOR RESIDUE HEM D 350
17	BC8	SOFTWARE	ARG E:31 , ALA E:34 , SER E:35 , ARG E:38 , PHE E:41 , SER E:73 , ALA E:140 , PRO E:141 , LEU E:166 , GLY E:169 , HIS E:170 , PHE E:172 , GLY E:173 , LYS E:174 , ASN E:175 , GLN E:176 , PHE E:179 , PHE E:221 , SER E:246 , HOH E:393	BINDING SITE FOR RESIDUE HEM E 350
18	BC9	SOFTWARE	ARG F:31 , ALA F:34 , SER F:35 , ARG F:38 , PHE F:41 , SER F:73 , ALA F:140 , PRO F:141 , LEU F:166 , GLY F:169 , HIS F:170 , PHE F:172 , GLY F:173 , LYS F:174 , ASN F:175 , GLN F:176 , PHE F:179 , PHE F:221 , SER F:246 , HOH F:392	BINDING SITE FOR RESIDUE HEM F 350

Asymmetric/Biological Unit

No.	Residues
1	A:11	-	A:91
2	A:44	-	A:49
3	A:97	-	A:301
4	A:177	-	A:209
5	B:11	-	B:91
6	B:44	-	B:49
7	B:97	-	B:301
8	B:177	-	B:209
9	C:11	-	C:91
10	C:44	-	C:49
11	C:97	-	C:301
12	C:177	-	C:209
13	D:11	-	D:91
14	D:44	-	D:49
15	D:97	-	D:301
16	D:177	-	D:209
17	E:11	-	E:91
18	E:44	-	E:49
19	E:97	-	E:301
20	E:177	-	E:209
21	F:11	-	F:91
22	F:44	-	F:49
23	F:97	-	F:301
24	F:177	-	F:209

(no "Cis Peptide Bond" information available for 1ATJ)

(no "SAP(SNP)/Variant" information available for 1ATJ)

Asymmetric/Biological Unit (3, 18)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PEROXIDASE_4	PS50873	Plant heme peroxidase family profile.	PER1A_ARMRU	31-335	6	A:1-305 B:1-305 C:1-305 D:1-305 E:1-305 F:1-305
2	PEROXIDASE_2	PS00436	Peroxidases active site signature.	PER1A_ARMRU	63-74	6	A:33-44 B:33-44 C:33-44 D:33-44 E:33-44 F:33-44
3	PEROXIDASE_1	PS00435	Peroxidases proximal heme-ligand signature.	PER1A_ARMRU	192-202	6	A:162-172 B:162-172 C:162-172 D:162-172 E:162-172 F:162-172

(no "Exon" information available for 1ATJ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:306
 aligned with PER1A_ARMRU | P00433 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:306
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330      
          PER1A_ARMRU    31 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 336
               SCOP domains d1atja_ A: Plant peroxidase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1atjA01 A:2-138,A:285-305  [code=1.10.520.10, no name defined]                                                                           1atjA02 A:139-284 Peroxidase, domain 2                                                                                                            1atjA01              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhh.hhhh..hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PEROXIDASE_4  PDB: A:1-305 UniProt: 31-335                                                                                                                                                                                                                                                                       - PROSITE (1)
                PROSITE (2) --------------------------------PEROXIDASE_2---------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1atj A   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain B from PDB  Type:PROTEIN  Length:306
 aligned with PER1A_ARMRU | P00433 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:306
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330      
          PER1A_ARMRU    31 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 336
               SCOP domains d1atjb_ B: Plant peroxidase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1atjB01 B:2-138,B:285-305  [code=1.10.520.10, no name defined]                                                                           1atjB02 B:139-284 Peroxidase, domain 2                                                                                                            1atjB01              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhh.hhhh..hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PEROXIDASE_4  PDB: B:1-305 UniProt: 31-335                                                                                                                                                                                                                                                                       - PROSITE (1)
                PROSITE (2) --------------------------------PEROXIDASE_2---------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1atj B   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain C from PDB  Type:PROTEIN  Length:306
 aligned with PER1A_ARMRU | P00433 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:306
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330      
          PER1A_ARMRU    31 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 336
               SCOP domains d1atjc_ C: Plant peroxidase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1atjC01 C:2-138,C:285-305  [code=1.10.520.10, no name defined]                                                                           1atjC02 C:139-284 Peroxidase, domain 2                                                                                                            1atjC01              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhh.hhhh..hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PEROXIDASE_4  PDB: C:1-305 UniProt: 31-335                                                                                                                                                                                                                                                                       - PROSITE (1)
                PROSITE (2) --------------------------------PEROXIDASE_2---------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1atj C   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain D from PDB  Type:PROTEIN  Length:306
 aligned with PER1A_ARMRU | P00433 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:306
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330      
          PER1A_ARMRU    31 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 336
               SCOP domains d1atjd_ D: Plant peroxidase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1atjD01 D:2-138,D:285-305  [code=1.10.520.10, no name defined]                                                                           1atjD02 D:139-284 Peroxidase, domain 2                                                                                                            1atjD01              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhh.hhhh..hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PEROXIDASE_4  PDB: D:1-305 UniProt: 31-335                                                                                                                                                                                                                                                                       - PROSITE (1)
                PROSITE (2) --------------------------------PEROXIDASE_2---------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1atj D   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain E from PDB  Type:PROTEIN  Length:306
 aligned with PER1A_ARMRU | P00433 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:306
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330      
          PER1A_ARMRU    31 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 336
               SCOP domains d1atje_ E: Plant peroxidase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1atjE01 E:2-138,E:285-305  [code=1.10.520.10, no name defined]                                                                           1atjE02 E:139-284 Peroxidase, domain 2                                                                                                            1atjE01              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhh.hhhh..hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PEROXIDASE_4  PDB: E:1-305 UniProt: 31-335                                                                                                                                                                                                                                                                       - PROSITE (1)
                PROSITE (2) --------------------------------PEROXIDASE_2---------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1atj E   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain F from PDB  Type:PROTEIN  Length:306
 aligned with PER1A_ARMRU | P00433 from UniProtKB/Swiss-Prot  Length:353

    Alignment length:306
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330      
          PER1A_ARMRU    31 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 336
               SCOP domains d1atjf_ F: Plant peroxidase                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains -1atjF01 F:2-138,F:285-305  [code=1.10.520.10, no name defined]                                                                           1atjF02 F:139-284 Peroxidase, domain 2                                                                                                            1atjF01              - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh.....hhhhhhhhhhhhh.......hhh.........hhh..........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...................hhhhhhh.......hhhhhhhhhhh....hhhhhhhhhhhh..eeehhh.hhhh..hhh.........hhhhhhhhhh.........eee..........hhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PEROXIDASE_4  PDB: F:1-305 UniProt: 31-335                                                                                                                                                                                                                                                                       - PROSITE (1)
                PROSITE (2) --------------------------------PEROXIDASE_2---------------------------------------------------------------------------------------------------------------------PEROXIDASE_-------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1atj F   1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS 306
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All alpha proteins (14657)

Fold: Heme-dependent peroxidases (402)

Superfamily: Heme-dependent peroxidases (402)

Family: CCP-like (292)

Protein domain: Plant peroxidase (35)

Horseradish (Armoracia rusticana) [TaxId: 3704] (29)

1a	d1atja_	A:
1b	d1atjb_	B:
1c	d1atjc_	C:
1d	d1atjd_	D:
1e	d1atje_	E:
1f	d1atjf_	F:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Peroxidase; domain 1 (244)

Homologous Superfamily: [code=1.10.520.10, no name defined] (241)

Armoracia rusticana. Organism_taxid: 3704. (6)

1a	1atjA01	A:2-138,A:285-305
1b	1atjB01	B:2-138,B:285-305
1c	1atjC01	C:2-138,C:285-305
1d	1atjD01	D:2-138,D:285-305
1e	1atjE01	E:2-138,E:285-305
1f	1atjF01	F:2-138,F:285-305

Topology: Peroxidase; domain 2 (241)

Homologous Superfamily: Peroxidase, domain 2 (241)

Armoracia rusticana. Organism_taxid: 3704. (6)

2a	1atjA02	A:139-284
2b	1atjB02	B:139-284
2c	1atjC02	C:139-284
2d	1atjD02	D:139-284
2e	1atjE02	E:139-284
2f	1atjF02	F:139-284

(no "Pfam Domain" information available for 1ATJ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (PER1A_ARMRU | P00433)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004601	peroxidase activity	Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0042744	hydrogen peroxide catabolic process	The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005773	vacuole	A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1atj)

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	1atj
		Family and Domain Information	:	ProDom \| SYSTERS
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	PER1A_ARMRU \| P00433
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	1.11.1.7
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(no "Related Entries Specified in the PDB File" available for 1ATJ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 18)

Sites (18, 18)

SS Bonds (24, 24)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 18)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 6)

CATH Domains (2, 12)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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