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1ATJ
Asym. Unit
Info
Asym.Unit (374 KB)
Biol.Unit 1 (365 KB)
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(1)
Title
:
RECOMBINANT HORSERADISH PEROXIDASE C1A
Authors
:
M. Gajhede, D. J. Schuller, A. Henriksen, A. T. Smith, T. L. Poulos
Date
:
14 Aug 97 (Deposition) - 04 Feb 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Peroxidase, Oxidoreductase, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Gajhede, D. J. Schuller, A. Henriksen, A. T. Smith, T. L. Poulos
Crystal Structure Of Horseradish Peroxidase C At 2. 15 A Resolution.
Nat. Struct. Biol. V. 4 1032 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
HEM
6
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230
BINDING SITE FOR RESIDUE CA A 351
02
AC2
SOFTWARE
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52 , HOH A:366
BINDING SITE FOR RESIDUE CA A 352
03
AC3
SOFTWARE
THR B:171 , ASP B:222 , THR B:225 , ILE B:228 , ASP B:230
BINDING SITE FOR RESIDUE CA B 351
04
AC4
SOFTWARE
ASP B:43 , VAL B:46 , GLY B:48 , ASP B:50 , SER B:52 , HOH B:368
BINDING SITE FOR RESIDUE CA B 352
05
AC5
SOFTWARE
THR C:171 , ASP C:222 , THR C:225 , ILE C:228 , ASP C:230
BINDING SITE FOR RESIDUE CA C 351
06
AC6
SOFTWARE
ASP C:43 , VAL C:46 , GLY C:48 , ASP C:50 , SER C:52 , HOH C:367
BINDING SITE FOR RESIDUE CA C 352
07
AC7
SOFTWARE
THR D:171 , ASP D:222 , THR D:225 , ILE D:228 , ASP D:230
BINDING SITE FOR RESIDUE CA D 351
08
AC8
SOFTWARE
ASP D:43 , VAL D:46 , GLY D:48 , ASP D:50 , SER D:52 , HOH D:368
BINDING SITE FOR RESIDUE CA D 352
09
AC9
SOFTWARE
THR E:171 , ASP E:222 , THR E:225 , ILE E:228 , ASP E:230
BINDING SITE FOR RESIDUE CA E 351
10
BC1
SOFTWARE
ASP E:43 , VAL E:46 , GLY E:48 , ASP E:50 , SER E:52 , HOH E:368
BINDING SITE FOR RESIDUE CA E 352
11
BC2
SOFTWARE
THR F:171 , ASP F:222 , THR F:225 , ILE F:228 , ASP F:230
BINDING SITE FOR RESIDUE CA F 351
12
BC3
SOFTWARE
ASP F:43 , VAL F:46 , GLY F:48 , ASP F:50 , SER F:52 , HOH F:367
BINDING SITE FOR RESIDUE CA F 352
13
BC4
SOFTWARE
ARG A:31 , ALA A:34 , SER A:35 , ARG A:38 , PHE A:41 , SER A:73 , ALA A:140 , PRO A:141 , LEU A:166 , GLY A:169 , HIS A:170 , PHE A:172 , GLY A:173 , LYS A:174 , ASN A:175 , GLN A:176 , PHE A:179 , PHE A:221 , SER A:246 , HOH A:391
BINDING SITE FOR RESIDUE HEM A 350
14
BC5
SOFTWARE
ARG B:31 , ALA B:34 , SER B:35 , ARG B:38 , PHE B:41 , SER B:73 , ALA B:140 , PRO B:141 , LEU B:166 , GLY B:169 , HIS B:170 , PHE B:172 , GLY B:173 , LYS B:174 , ASN B:175 , GLN B:176 , PHE B:179 , PHE B:221 , SER B:246 , HOH B:393
BINDING SITE FOR RESIDUE HEM B 350
15
BC6
SOFTWARE
ARG C:31 , ALA C:34 , SER C:35 , ARG C:38 , PHE C:41 , SER C:73 , ALA C:140 , PRO C:141 , LEU C:166 , GLY C:169 , HIS C:170 , PHE C:172 , GLY C:173 , LYS C:174 , ASN C:175 , GLN C:176 , PHE C:179 , PHE C:221 , SER C:246 , HOH C:392
BINDING SITE FOR RESIDUE HEM C 350
16
BC7
SOFTWARE
ARG D:31 , ALA D:34 , SER D:35 , ARG D:38 , PHE D:41 , SER D:73 , ALA D:140 , PRO D:141 , LEU D:166 , GLY D:169 , HIS D:170 , PHE D:172 , GLY D:173 , LYS D:174 , ASN D:175 , GLN D:176 , PHE D:179 , PHE D:221 , SER D:246 , HOH D:393
BINDING SITE FOR RESIDUE HEM D 350
17
BC8
SOFTWARE
ARG E:31 , ALA E:34 , SER E:35 , ARG E:38 , PHE E:41 , SER E:73 , ALA E:140 , PRO E:141 , LEU E:166 , GLY E:169 , HIS E:170 , PHE E:172 , GLY E:173 , LYS E:174 , ASN E:175 , GLN E:176 , PHE E:179 , PHE E:221 , SER E:246 , HOH E:393
BINDING SITE FOR RESIDUE HEM E 350
18
BC9
SOFTWARE
ARG F:31 , ALA F:34 , SER F:35 , ARG F:38 , PHE F:41 , SER F:73 , ALA F:140 , PRO F:141 , LEU F:166 , GLY F:169 , HIS F:170 , PHE F:172 , GLY F:173 , LYS F:174 , ASN F:175 , GLN F:176 , PHE F:179 , PHE F:221 , SER F:246 , HOH F:392
BINDING SITE FOR RESIDUE HEM F 350
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (A:1-305,B:1-305,C:1-305,D:1-305,E:...)
2: PEROXIDASE_2 (A:33-44,B:33-44,C:33-44,D:33-44,E:...)
3: PEROXIDASE_1 (A:162-172,B:162-172,C:162-172,D:16...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER1A_ARMRU
31-335
6
A:1-305
B:1-305
C:1-305
D:1-305
E:1-305
F:1-305
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER1A_ARMRU
63-74
6
A:33-44
B:33-44
C:33-44
D:33-44
E:33-44
F:33-44
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER1A_ARMRU
192-202
6
A:162-172
B:162-172
C:162-172
D:162-172
E:162-172
F:162-172
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1atja_ (A:)
1b: SCOP_d1atjb_ (B:)
1c: SCOP_d1atjc_ (C:)
1d: SCOP_d1atjd_ (D:)
1e: SCOP_d1atje_ (E:)
1f: SCOP_d1atjf_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Horseradish (Armoracia rusticana) [TaxId: 3704]
(29)
1a
d1atja_
A:
1b
d1atjb_
B:
1c
d1atjc_
C:
1d
d1atjd_
D:
1e
d1atje_
E:
1f
d1atjf_
F:
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1atjA01 (A:2-138,A:285-305)
1b: CATH_1atjB01 (B:2-138,B:285-305)
1c: CATH_1atjC01 (C:2-138,C:285-305)
1d: CATH_1atjD01 (D:2-138,D:285-305)
1e: CATH_1atjE01 (E:2-138,E:285-305)
1f: CATH_1atjF01 (F:2-138,F:285-305)
2a: CATH_1atjA02 (A:139-284)
2b: CATH_1atjB02 (B:139-284)
2c: CATH_1atjC02 (C:139-284)
2d: CATH_1atjD02 (D:139-284)
2e: CATH_1atjE02 (E:139-284)
2f: CATH_1atjF02 (F:139-284)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
1a
1atjA01
A:2-138,A:285-305
1b
1atjB01
B:2-138,B:285-305
1c
1atjC01
C:2-138,C:285-305
1d
1atjD01
D:2-138,D:285-305
1e
1atjE01
E:2-138,E:285-305
1f
1atjF01
F:2-138,F:285-305
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
2a
1atjA02
A:139-284
2b
1atjB02
B:139-284
2c
1atjC02
C:139-284
2d
1atjD02
D:139-284
2e
1atjE02
E:139-284
2f
1atjF02
F:139-284
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (374 KB)
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