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1A6E
Biol. Unit 1
Info
Asym.Unit (195 KB)
Biol.Unit 1, α-C (1.4 MB)
Biol.Unit 1 (1.4 MB)
Biol.Unit 2 (739 KB)
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(1)
Title
:
THERMOSOME-MG-ADP-ALF3 COMPLEX
Authors
:
L. Ditzel, J. Loewe, D. Stock, K. -O. Stetter, H. Huber, R. Huber, S. Stei
Date
:
24 Feb 98 (Deposition) - 23 Mar 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (8x)
Biol. Unit 2: A,B (4x)
Keywords
:
Thermoplasma Acidophilum, Group Ii Chaperonin, Cct, Tric, Protein Folding, Atpase, Transition State Complex, Atp Hydrolysis, Chaperonin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Ditzel, J. Lowe, D. Stock, K. O. Stetter, H. Huber, R. Huber, S. Steinbacher
Crystal Structure Of The Thermosome, The Archaeal Chaperoni And Homolog Of Cct.
Cell(Cambridge, Mass. ) V. 93 125 1998
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Hetero Components
(2, 32)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: ALUMINUM FLUORIDE (AF3a)
2b: ALUMINUM FLUORIDE (AF3b)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
16
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
AF3
16
Ligand/Ion
ALUMINUM FLUORIDE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: ASB (UNKNOWN)
8: ASE (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:93 , ADP B:998 , AF3 B:999
BINDING SITE FOR RESIDUE MG B 997
2
AC2
SOFTWARE
ASP A:94 , ADP A:898 , AF3 A:899
BINDING SITE FOR RESIDUE MG A 897
3
AC3
SOFTWARE
SER B:40 , LEU B:41 , GLY B:42 , PRO B:43 , ASP B:93 , GLY B:94 , THR B:96 , THR B:97 , THR B:158 , SER B:162 , GLY B:408 , GLY B:409 , LEU B:449 , ILE B:477 , PHE B:480 , MET B:487 , VAL B:492 , GLU B:494 , MG B:997 , AF3 B:999
BINDING SITE FOR RESIDUE ADP B 998
4
AC4
SOFTWARE
ASN B:61 , GLY B:63 , ASP B:93 , THR B:95 , THR B:96 , LYS B:163 , ASP B:391 , HOH B:951 , MG B:997 , ADP B:998
BINDING SITE FOR RESIDUE AF3 B 999
5
AC5
SOFTWARE
THR A:41 , LEU A:42 , GLY A:43 , PRO A:44 , ASP A:94 , GLY A:95 , THR A:96 , THR A:97 , THR A:98 , THR A:157 , SER A:160 , GLY A:407 , GLY A:408 , LEU A:448 , LEU A:478 , VAL A:491 , ASP A:493 , MG A:897 , AF3 A:899
BINDING SITE FOR RESIDUE ADP A 898
6
AC6
SOFTWARE
ASN A:62 , ASP A:63 , GLY A:64 , ASP A:94 , THR A:96 , THR A:97 , ASP A:390 , MG A:897 , ADP A:898 , HOH A:950
BINDING SITE FOR RESIDUE AF3 A 899
7
ASB
UNKNOWN
GLY B:42 , PRO B:43 , ARG B:44 , GLY B:63 , GLY B:94 , THR B:96 , THR B:97 , ALA B:98 , GLN B:157 , THR B:390 , ILE B:493
RESIDUE NUMBERING ACCORDING TO ALPHA-TYPE SUBUNIT.
8
ASE
UNKNOWN
LEU A:42 , GLY A:43 , PRO A:44 , ASP A:63 , ASP A:94 , THR A:96 , THR A:97 , THR A:98 , THR A:157 , ASP A:390 , ASP A:493
RESIDUE NUMBERING ACCORDING TO ALPHA-TYPE SUBUNIT.
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 48)
Info
All PROSITE Patterns/Profiles
1: TCP1_1 (B:38-50)
2: TCP1_2 (B:59-75)
3: TCP1_3 (B:87-95)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TCP1_1
PS00750
Chaperonins TCP-1 signature 1.
THSB_THEAC
38-50
8
B:38-50
THSA_THEAC
39-51
8
A:39-51
2
TCP1_2
PS00751
Chaperonins TCP-1 signature 2.
THSB_THEAC
59-75
8
B:59-75
THSA_THEAC
60-76
8
A:60-76
3
TCP1_3
PS00995
Chaperonins TCP-1 signature 3.
THSB_THEAC
87-95
8
B:87-95
THSA_THEAC
88-96
8
A:88-96
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(6, 6)
Info
All SCOP Domains
1a: SCOP_d1a6ea1 (A:17-145,A:404-519)
2a: SCOP_d1a6eb1 (B:20-144,B:404-521)
3a: SCOP_d1a6ea3 (A:146-214,A:368-403)
4a: SCOP_d1a6eb3 (B:145-215,B:368-403)
5a: SCOP_d1a6ea2 (A:215-367)
6a: SCOP_d1a6eb2 (B:216-367)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GroEL equatorial domain-like
(23)
Superfamily
:
GroEL equatorial domain-like
(23)
Family
:
Group II chaperonin (CCT, TRIC), ATPase domain
(8)
Protein domain
:
Thermosome, E domain
(8)
Thermoplasma acidophilum, alpha chain [TaxId: 2303]
(2)
1a
d1a6ea1
A:17-145,A:404-519
Thermoplasma acidophilum, beta chain [TaxId: 2303]
(2)
2a
d1a6eb1
B:20-144,B:404-521
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GroEL-intermediate domain like
(23)
Superfamily
:
GroEL-intermediate domain like
(23)
Family
:
Group II chaperonin (CCT, TRIC), intermediate domain
(8)
Protein domain
:
Thermosome, I domain
(8)
Thermoplasma acidophilum, alpha chain [TaxId: 2303]
(2)
3a
d1a6ea3
A:146-214,A:368-403
Thermoplasma acidophilum, beta chain [TaxId: 2303]
(2)
4a
d1a6eb3
B:145-215,B:368-403
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
GroEL apical domain-like
(41)
Family
:
Group II chaperonin (CCT, TRIC), apical domain
(13)
Protein domain
:
Thermosome, A-domain
(13)
Thermoplasma acidophilum, alpha chain [TaxId: 2303]
(4)
5a
d1a6ea2
A:215-367
Thermoplasma acidophilum, beta chain [TaxId: 2303]
(3)
6a
d1a6eb2
B:216-367
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1a6eA02 (A:144-213,A:367-402)
1b: CATH_1a6eB02 (B:144-214,B:367-402)
2a: CATH_1a6eA03 (A:214-366)
2b: CATH_1a6eB03 (B:215-366)
3a: CATH_1a6eA01 (A:17-143,A:403-519)
3b: CATH_1a6eB01 (B:20-143,B:403-520)
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Architectures
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GROEL; domain 2
(26)
Homologous Superfamily
:
GROEL, domain 2
(26)
Thermoplasma acidophilum. Organism_taxid: 2303.
(2)
1a
1a6eA02
A:144-213,A:367-402
1b
1a6eB02
B:144-214,B:367-402
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
GroEL
(39)
Homologous Superfamily
:
GroEL
(39)
Thermoplasma acidophilum. Organism_taxid: 2303.
(3)
2a
1a6eA03
A:214-366
2b
1a6eB03
B:215-366
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GROEL; domain 1
(26)
Homologous Superfamily
:
GROEL, domain 1
(26)
Thermoplasma acidophilum. Organism_taxid: 2303.
(2)
3a
1a6eA01
A:17-143,A:403-519
3b
1a6eB01
B:20-143,B:403-520
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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select residue range 5 to 10 in all chains
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Asym.Unit (195 KB)
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