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4A69
Biol. Unit 1
Info
Asym.Unit (159 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
STRUCTURE OF HDAC3 BOUND TO COREPRESSOR AND INOSITOL TETRAPHOSPHATE
Authors
:
P. J. Watson, L. Fairall, G. M. Santos, J. W. R. Schwabe
Date
:
01 Nov 11 (Deposition) - 11 Jan 12 (Release) - 25 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Transcription, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. J. Watson, L. Fairall, G. M. Santos, J. W. R. Schwabe
Structure Of Hdac3 Bound To Co-Repressor And Inositol Tetraphosphate.
Nature V. 481 335 2012
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: D-MYO INOSITOL 1,4,5,6 TETRAKISPHO... (I0Pa)
3b: D-MYO INOSITOL 1,4,5,6 TETRAKISPHO... (I0Pb)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
I0P
1
Ligand/Ion
D-MYO INOSITOL 1,4,5,6 TETRAKISPHOSPHATE
4
K
-1
Ligand/Ion
POTASSIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:170 , HIS A:172 , ASP A:259 , ACT A:501
BINDING SITE FOR RESIDUE ZN A 500
02
AC2
SOFTWARE
HIS A:134 , HIS A:135 , GLY A:143 , ASP A:170 , HIS A:172 , ASP A:259 , GLY A:296 , TYR A:298 , ZN A:500
BINDING SITE FOR RESIDUE ACT A 501
03
AC3
SOFTWARE
ASP A:168 , ASP A:170 , HIS A:172 , SER A:191 , PHE A:192
BINDING SITE FOR RESIDUE K A 503
04
AC4
SOFTWARE
PHE A:181 , THR A:184 , VAL A:187 , TYR A:217 , HOH A:2087 , HOH A:2090
BINDING SITE FOR RESIDUE K A 504
05
AC5
SOFTWARE
GLN A:113 , THR A:116 , HOH A:2070 , ARG B:265 , I0P D:501 , HOH D:2011
BINDING SITE FOR RESIDUE GOL A 505
06
AC6
SOFTWARE
THR A:116 , ASN A:119 , ASN A:120 , GLU A:156 , TYR A:160 , LYS D:449 , I0P D:501
BINDING SITE FOR RESIDUE GOL A 506
07
AC8
SOFTWARE
HIS B:134 , HIS B:135 , ASP B:170 , HIS B:172 , ASP B:259 , GLY B:296 , TYR B:298 , ZN B:500 , MET C:412
BINDING SITE FOR RESIDUE ACT B 501
08
BC2
SOFTWARE
ARG A:265 , HOH A:2130 , TYR B:51 , GLN B:113 , THR B:116 , I0P C:501
BINDING SITE FOR RESIDUE GOL B 505
09
BC3
SOFTWARE
ASN B:119 , ASN B:120 , GLU B:156 , TYR B:160 , LYS C:449 , TYR C:470 , I0P C:501
BINDING SITE FOR RESIDUE GOL B 506
10
BC4
SOFTWARE
HIS A:17 , GLY A:21 , LYS A:25 , ARG A:265 , VAL A:300 , ARG A:301 , TYR A:331 , HOH A:2139 , HOH A:2140 , HOH A:2143 , ASN B:120 , GOL B:505 , GOL B:506 , HOH B:2062 , LYS C:449 , TYR C:470 , TYR C:471 , LYS C:474 , HOH C:2021 , HOH C:2022 , HOH C:2023
BINDING SITE FOR RESIDUE I0P C 501
11
BC5
SOFTWARE
THR A:116 , ASN A:120 , GOL A:505 , GOL A:506 , HIS B:17 , GLY B:21 , HIS B:22 , LYS B:25 , ARG B:265 , VAL B:300 , TYR B:331 , HOH B:2120 , HOH B:2121 , LYS D:449 , TYR D:470 , TYR D:471 , LYS D:474 , HOH D:2009 , HOH D:2010 , HOH D:2011
BINDING SITE FOR RESIDUE I0P D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SANT (C:427-476)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SANT
PS51293
SANT domain profile.
NCOR2_HUMAN
427-478
610-661
1
C:427-476
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4a69c_ (C:)
1b: SCOP_d4a69d_ (D:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Myb/SANT domain
(34)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d4a69c_
C:
1b
d4a69d_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (159 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
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