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Getting 'Biological Unit' information from database.
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3QRF
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (94 KB)
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(1)
Title
:
STRUCTURE OF A DOMAIN-SWAPPED FOXP3 DIMER
Authors
:
H. S. Bandukwala, Y Wu, M Feurer, Y Chen, B Barbosa, S Ghosh, J. C. St C. Benoist, D. Mathis, A. Rao, L. Chen
Date
:
17 Feb 11 (Deposition) - 20 Apr 11 (Release) - 04 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,F,G,H,I,M,N
Biol. Unit 1: C,D,F,G,N (1x)
Biol. Unit 2: A,B,H,I,M (1x)
Keywords
:
Beta Barrel, Domain Swap, Forkhead Domain, Immnoglobulin Fold, Protein-Dna Complex, Double Helix, Transcription Regulation, Dna Binding, Nucleus, Dna Binding Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Bandukwala, Y. Wu, M. Feuerer, Y. Chen, B. Barboza, S. Ghosh, J. C. Stroud, C. Benoist, D. Mathis, A. Rao, L. Chen
Structure Of A Domain-Swapped Foxp3 Dimer On Dna And Its Function In Regulatory T Cells.
Immunity V. 34 479 2011
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU F:389 , SER F:390 , HIS F:392 , PHE F:395
BINDING SITE FOR RESIDUE MG F 1
2
AC2
SOFTWARE
LEU G:389 , SER G:390 , HIS G:392 , PHE G:395
BINDING SITE FOR RESIDUE MG G 1
3
AC3
SOFTWARE
LEU H:389 , SER H:390 , HIS H:392 , PHE H:395
BINDING SITE FOR RESIDUE MG H 1
4
AC4
SOFTWARE
LEU I:389 , SER I:390 , HIS I:392 , PHE I:395
BINDING SITE FOR RESIDUE MG I 1
[
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SAPs(SNPs)/Variants
(5, 18)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023569 (I363V, chain F/G/H/I, )
2: VAR_011331 (F371C, chain F/G/H/I, )
3: VAR_011332 (A384T, chain F/G/H/I, )
4: VAR_011333 (R397W, chain F/G/H/I, )
5: VAR_051783 (H446R, chain M/N, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023569
I
363
V
FOXP3_HUMAN
Disease (IPEX)
---
F/G/H/I
I
363
V
2
UniProt
VAR_011331
F
371
C
FOXP3_HUMAN
Disease (IPEX)
---
F/G/H/I
F
371
C
3
UniProt
VAR_011332
A
384
T
FOXP3_HUMAN
Disease (IPEX)
---
F/G/H/I
A
384
T
4
UniProt
VAR_011333
R
397
W
FOXP3_HUMAN
Disease (IPEX)
28935477
F/G/H/I
R
397
W
5
UniProt
VAR_051783
H
446
R
NFAC2_HUMAN
Polymorphism
12479626
M/N
H
446
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: FORK_HEAD_3 (F:337-417,G:337-417,H:337-417,I:33...)
2: FORK_HEAD_2 (F:381-387,G:381-387,H:381-387,I:38...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FORK_HEAD_3
PS50039
Fork head domain profile.
FOXP3_HUMAN
337-423
4
F:337-417
G:337-417
H:337-417
I:337-417
2
FORK_HEAD_2
PS00658
Fork head domain signature 2.
FOXP3_HUMAN
381-387
4
F:381-387
G:381-387
H:381-387
I:381-387
[
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Exons
(7, 14)
Info
All Exons
Exon 1.4 (M:393-444 | N:393-444)
Exon 1.5 (M:445-512 | N:445-512)
Exon 1.6 (M:512-570 | N:512-570)
Exon 1.7 (M:570-617 | N:570-617)
Exon 1.8 (M:617-635 | N:617-635)
Exon 1.9 (M:636-678 | N:636-678)
Exon 1.10 (M:678-678 | N:678-678)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.12c
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000396009
2
ENSE00001455518
chr20:
50159258-50158909
350
NFAC2_HUMAN
1-44
44
0
-
-
1.3
ENST00000396009
3
ENSE00000662713
chr20:
50140649-50139620
1030
NFAC2_HUMAN
44-387
344
0
-
-
1.4
ENST00000396009
4
ENSE00000662712
chr20:
50133494-50133323
172
NFAC2_HUMAN
387-444
58
2
M:393-444
N:393-444
52
52
1.5
ENST00000396009
5
ENSE00000662711
chr20:
50092197-50091995
203
NFAC2_HUMAN
445-512
68
2
M:445-512
N:445-512
68
68
1.6
ENST00000396009
6
ENSE00000662710
chr20:
50090689-50090517
173
NFAC2_HUMAN
512-570
59
2
M:512-570
N:512-570
59
59
1.7
ENST00000396009
7
ENSE00000662709
chr20:
50071225-50071085
141
NFAC2_HUMAN
570-617
48
2
M:570-617
N:570-617
48
48
1.8
ENST00000396009
8
ENSE00000662708
chr20:
50052298-50052243
56
NFAC2_HUMAN
617-635
19
2
M:617-635
N:617-635
19
19
1.9
ENST00000396009
9
ENSE00000662707
chr20:
50051851-50051725
127
NFAC2_HUMAN
636-678
43
2
M:636-678
N:636-678
43
43
1.10
ENST00000396009
10
ENSE00001455516
chr20:
50049293-50048604
690
NFAC2_HUMAN
678-908
231
2
M:678-678
N:678-678
1
1
1.12c
ENST00000396009
12c
ENSE00001955202
chr20:
50007988-50003494
4495
NFAC2_HUMAN
908-925
18
0
-
-
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3qrff_ (F:)
1b: SCOP_d3qrfg_ (G:)
1c: SCOP_d3qrfh_ (H:)
1d: SCOP_d3qrfi_ (I:)
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(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Forkhead DNA-binding domain
(17)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d3qrff_
F:
1b
d3qrfg_
G:
1c
d3qrfh_
H:
1d
d3qrfi_
I:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_TIG_3qrfN01 (N:582-675)
1b: PFAM_TIG_3qrfN02 (N:582-675)
2a: PFAM_RHD_3qrfN03 (N:410-570)
2b: PFAM_RHD_3qrfN04 (N:410-570)
3a: PFAM_Fork_head_3qrfI01 (I:337-417)
3b: PFAM_Fork_head_3qrfI02 (I:337-417)
3c: PFAM_Fork_head_3qrfI03 (I:337-417)
3d: PFAM_Fork_head_3qrfI04 (I:337-417)
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Clans
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(
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(
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Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
TIG
(28)
Homo sapiens (Human)
(12)
1a
TIG-3qrfN01
N:582-675
1b
TIG-3qrfN02
N:582-675
Clan
:
P53-like
(54)
Family
:
RHD
(21)
Homo sapiens (Human)
(13)
2a
RHD-3qrfN03
N:410-570
2b
RHD-3qrfN04
N:410-570
Clan
:
no clan defined [family: Fork_head]
(7)
Family
:
Fork_head
(7)
Homo sapiens (Human)
(6)
3a
Fork_head-3qrfI01
I:337-417
3b
Fork_head-3qrfI02
I:337-417
3c
Fork_head-3qrfI03
I:337-417
3d
Fork_head-3qrfI04
I:337-417
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