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3OTP
Asym. Unit
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Asym.Unit (358 KB)
Biol.Unit 1 (692 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DEGP DODECAMER WITH A MODEL SUBSTRATE
Authors
:
S. Kim, R. A. Grant, R. T. Sauer
Date
:
13 Sep 10 (Deposition) - 19 Jan 11 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.76
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Keywords
:
Typsin-Like Protease Domain Pdz Domains, Protease, Hydrolase
(Keyword Search:
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Reference
:
S. Kim, R. A. Grant, R. T. Sauer
Covalent Linkage Of Distinct Substrate Degrons Controls Assembly And Disassembly Of Degp Proteolytic Cages.
Cell(Cambridge, Mass. ) V. 145 67 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:254-345,B:254-345,C:254-345,D:25...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
DEGP_ECOLI
280-371
377-466
12
A:254-345
B:254-345
C:254-345
D:254-345
E:254-345
F:254-345
A:351-440
B:351-440
C:351-440
D:351-440
E:351-440
F:351-440
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Exons
(2, 12)
Info
All Exons
Exon 1.1a (G:28-28 | H:28-28 | I:28-28 | J:28...)
Exon 1.2 (G:28-58 (gaps) | H:28-58 (gaps) | ...)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
6
G:28-28
H:28-28
I:28-28
J:28-28
K:28-28
L:28-28
1
1
1
1
1
1
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
6
G:28-58 (gaps)
H:28-58 (gaps)
I:28-58 (gaps)
J:28-58 (gaps)
K:28-58 (gaps)
L:28-58 (gaps)
31
31
31
31
31
31
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
0
-
-
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
0
-
-
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SCOP Domains
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CATH Domains
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Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_Lys_3otpL01 (L:28-58)
1b: PFAM_Lys_3otpL02 (L:28-58)
1c: PFAM_Lys_3otpL03 (L:28-58)
1d: PFAM_Lys_3otpL04 (L:28-58)
1e: PFAM_Lys_3otpL05 (L:28-58)
1f: PFAM_Lys_3otpL06 (L:28-58)
2a: PFAM_PDZ_3otpF01 (F:368-437)
2b: PFAM_PDZ_3otpF02 (F:368-437)
2c: PFAM_PDZ_3otpF03 (F:368-437)
2d: PFAM_PDZ_3otpF04 (F:368-437)
2e: PFAM_PDZ_3otpF05 (F:368-437)
2f: PFAM_PDZ_3otpF06 (F:368-437)
2g: PFAM_PDZ_3otpF07 (F:368-437)
2h: PFAM_PDZ_3otpF08 (F:368-437)
2i: PFAM_PDZ_3otpF09 (F:368-437)
2j: PFAM_PDZ_3otpF10 (F:368-437)
2k: PFAM_PDZ_3otpF11 (F:368-437)
2l: PFAM_PDZ_3otpF12 (F:368-437)
3a: PFAM_Trypsin_2_3otpF13 (F:88-224)
3b: PFAM_Trypsin_2_3otpF14 (F:88-224)
3c: PFAM_Trypsin_2_3otpF15 (F:88-224)
3d: PFAM_Trypsin_2_3otpF16 (F:88-224)
3e: PFAM_Trypsin_2_3otpF17 (F:88-224)
3f: PFAM_Trypsin_2_3otpF18 (F:88-224)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Lysozyme
(266)
Family
:
Lys
(245)
Gallus gallus (Chicken)
(156)
1a
Lys-3otpL01
L:28-58
1b
Lys-3otpL02
L:28-58
1c
Lys-3otpL03
L:28-58
1d
Lys-3otpL04
L:28-58
1e
Lys-3otpL05
L:28-58
1f
Lys-3otpL06
L:28-58
Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Escherichia coli (strain K12)
(21)
2a
PDZ-3otpF01
F:368-437
2b
PDZ-3otpF02
F:368-437
2c
PDZ-3otpF03
F:368-437
2d
PDZ-3otpF04
F:368-437
2e
PDZ-3otpF05
F:368-437
2f
PDZ-3otpF06
F:368-437
2g
PDZ-3otpF07
F:368-437
2h
PDZ-3otpF08
F:368-437
2i
PDZ-3otpF09
F:368-437
2j
PDZ-3otpF10
F:368-437
2k
PDZ-3otpF11
F:368-437
2l
PDZ-3otpF12
F:368-437
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin_2
(18)
Escherichia coli (strain K12)
(6)
3a
Trypsin_2-3otpF13
F:88-224
3b
Trypsin_2-3otpF14
F:88-224
3c
Trypsin_2-3otpF15
F:88-224
3d
Trypsin_2-3otpF16
F:88-224
3e
Trypsin_2-3otpF17
F:88-224
3f
Trypsin_2-3otpF18
F:88-224
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