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3HXA
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DCOH1THR51SER
Authors
:
H. Y. Rho, C. N. Jones, R. B. Rose
Date
:
20 Jun 09 (Deposition) - 25 Aug 10 (Release) - 25 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Alpha And Beta Structure, Lyase, Nucleus, Tetrahydrobiopterin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Y. Rho, C. N. Jones, R. B. Rose
Crystal Structure Of Dcoh1Thr51Ser
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
2
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:62 , THR A:79 , HIS A:80 , GLU A:81 , ARG A:88 , HOH A:118
BINDING SITE FOR RESIDUE SO4 A 105
02
AC2
SOFTWARE
PHE A:35 , GLN H:15 , LEU H:16
BINDING SITE FOR RESIDUE GOL A 106
03
AC3
SOFTWARE
HIS B:62 , THR B:79 , HIS B:80 , GLU B:81 , ARG B:88 , HOH B:331
BINDING SITE FOR RESIDUE SO4 B 105
04
AC4
SOFTWARE
HIS C:62 , THR C:79 , HIS C:80 , GLU C:81 , ARG C:88 , HOH C:136
BINDING SITE FOR RESIDUE SO4 C 105
05
AC5
SOFTWARE
LYS C:36 , GLU C:97 , ALA C:100 , HOH C:115 , HOH C:512
BINDING SITE FOR RESIDUE GOL C 106
06
AC6
SOFTWARE
HIS D:62 , THR D:79 , HIS D:80 , GLU D:81 , ARG D:88 , HOH D:153 , HOH D:296
BINDING SITE FOR RESIDUE SO4 D 105
07
AC7
SOFTWARE
LYS D:41 , ARG D:45 , HOH D:519
BINDING SITE FOR RESIDUE GOL D 106
08
AC8
SOFTWARE
HIS E:62 , THR E:79 , HIS E:80 , GLU E:81 , ARG E:88 , HOH E:109
BINDING SITE FOR RESIDUE SO4 E 105
09
AC9
SOFTWARE
ASN A:19 , SER A:94 , ALA E:22 , VAL E:23 , HOH E:261
BINDING SITE FOR RESIDUE GOL E 106
10
BC1
SOFTWARE
HIS F:62 , THR F:79 , HIS F:80 , GLU F:81 , ARG F:88 , HOH F:160
BINDING SITE FOR RESIDUE SO4 F 105
11
BC2
SOFTWARE
HIS F:6 , ARG F:7 , CYS F:82
BINDING SITE FOR RESIDUE GOL F 106
12
BC3
SOFTWARE
HIS G:62 , THR G:79 , HIS G:80 , GLU G:81 , ARG G:88 , GOL G:108 , HOH G:131
BINDING SITE FOR RESIDUE SO4 G 105
13
BC4
SOFTWARE
HIS G:39 , ASN G:71 , LYS G:72 , HOH G:318
BINDING SITE FOR RESIDUE GOL G 106
14
BC5
SOFTWARE
ARG E:52 , SER E:102 , ARG G:45 , SER G:102 , MET G:103 , HOH G:472 , HOH G:522
BINDING SITE FOR RESIDUE GOL G 107
15
BC6
SOFTWARE
ASP G:61 , HIS G:63 , SO4 G:105 , HOH G:131
BINDING SITE FOR RESIDUE GOL G 108
16
BC7
SOFTWARE
HIS H:62 , THR H:79 , HIS H:80 , GLU H:81 , ARG H:88 , HOH H:340 , HOH H:486
BINDING SITE FOR RESIDUE SO4 H 105
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(3, 24)
Info
All Exons
Exon 1.3 (A:5-45 | B:5-45 | C:6-45 | D:4-45 ...)
Exon 1.4 (A:46-72 | B:46-72 | C:46-72 | D:46...)
Exon 1.5 (A:73-104 | B:73-103 | C:73-103 | D...)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000000687
1
ENSRNOE00000458408
chr20:
28366640-28366655
16
PHS_RAT
-
0
0
-
-
1.2
ENSRNOT00000000687
2
ENSRNOE00000433258
chr20:
28448637-28448720
84
PHS_RAT
1-1
1
0
-
-
1.3
ENSRNOT00000000687
3
ENSRNOE00000004350
chr20:
28451543-28451674
132
PHS_RAT
2-45
44
8
A:5-45
B:5-45
C:6-45
D:4-45
E:4-45
F:4-45
G:5-45
H:4-45
41
41
40
42
42
42
41
42
1.4
ENSRNOT00000000687
4
ENSRNOE00000004351
chr20:
28452067-28452147
81
PHS_RAT
46-72
27
8
A:46-72
B:46-72
C:46-72
D:46-72
E:46-72
F:46-72
G:46-72
H:46-72
27
27
27
27
27
27
27
27
1.5
ENSRNOT00000000687
5
ENSRNOE00000004352
chr20:
28453672-28454164
493
PHS_RAT
73-104
32
8
A:73-104
B:73-103
C:73-103
D:73-103
E:73-103
F:73-103
G:73-103
H:73-103
32
31
31
31
31
31
31
31
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3hxaa_ (A:)
1b: SCOP_d3hxab_ (B:)
1c: SCOP_d3hxac_ (C:)
1d: SCOP_d3hxad_ (D:)
1e: SCOP_d3hxae_ (E:)
1f: SCOP_d3hxaf_ (F:)
1g: SCOP_d3hxag_ (G:)
1h: SCOP_d3hxah_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DCoH-like
(107)
Superfamily
:
PCD-like
(11)
Family
:
PCD-like
(9)
Protein domain
:
automated matches
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d3hxaa_
A:
1b
d3hxab_
B:
1c
d3hxac_
C:
1d
d3hxad_
D:
1e
d3hxae_
E:
1f
d3hxaf_
F:
1g
d3hxag_
G:
1h
d3hxah_
H:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
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)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (148 KB)
Header - Asym.Unit
Biol.Unit 1 (72 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
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