PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3EQ5
Asym. Unit
Info
Asym.Unit (196 KB)
Biol.Unit 1 (20 KB)
Biol.Unit 10 (19 KB)
Biol.Unit 11 (18 KB)
Biol.Unit 12 (18 KB)
Biol.Unit 2 (19 KB)
Biol.Unit 3 (18 KB)
Biol.Unit 4 (18 KB)
Biol.Unit 5 (18 KB)
Biol.Unit 6 (19 KB)
Biol.Unit 7 (17 KB)
Biol.Unit 8 (18 KB)
Biol.Unit 9 (18 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF FRAGMENT 137 TO 238 OF THE HUMAN SKI-LIKE PROTEIN
Authors
:
L. Tresaugues, M. Wisniewska, J. Andersson, C. H. Arrowsmith, H. Bergl C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flo S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg T. Kotenyova, L. Lehtio, M. Moche, M. E. Nilsson, T. Nyman, K. Olesen, C J. Sagemark, H. Schueler, A. G. Thorsell, S. Van Den Berg, M. Welin, M. Wikstrom, J. Weigelt, P. Nordlund, Structural Genomics Consort
Date
:
30 Sep 08 (Deposition) - 27 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Skil, Ski-Like Protein, Sno, Receptor Signalling, Tgf-Beta, Signaling Protein, Structural Genomics, Sgc Stockholm, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Tresaugues, M. Wisniewska, J. Andersson, C. H. Arrowsmith, H. Berglund, C. Bountra, R. Collins, L. G. Dahlgren, A. M. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, A. Johansson, I. Johansson, T. Karlberg, T. Kotenyova, L. Lehtio, M. Moche, M. E. Nilsson, T. Nyman, K. Olesen, C. Persson, J. Sagemark, H. Schueler, A. G. Thorsell, S. Van Den Berg, M. Welin, M. Wikstrom, J. Weigelt, P. Nordlund
Crystal Structure Of Fragment 137 To 238 Of The Human Ski-Like Protein.
To Be Published
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3eq5a_ (A:)
1b: SCOP_d3eq5b_ (B:)
1c: SCOP_d3eq5k_ (K:)
1d: SCOP_d3eq5l_ (L:)
1e: SCOP_d3eq5c_ (C:)
1f: SCOP_d3eq5d_ (D:)
1g: SCOP_d3eq5e_ (E:)
1h: SCOP_d3eq5f_ (F:)
1i: SCOP_d3eq5g_ (G:)
1j: SCOP_d3eq5h_ (H:)
1k: SCOP_d3eq5i_ (I:)
1l: SCOP_d3eq5j_ (J:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Putative DNA-binding domain
(45)
Superfamily
:
Putative DNA-binding domain
(45)
Family
:
Dachshund-homology domain
(3)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3eq5a_
A:
1b
d3eq5b_
B:
1c
d3eq5k_
K:
1d
d3eq5l_
L:
1e
d3eq5c_
C:
1f
d3eq5d_
D:
1g
d3eq5e_
E:
1h
d3eq5f_
F:
1i
d3eq5g_
G:
1j
d3eq5h_
H:
1k
d3eq5i_
I:
1l
d3eq5j_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3eq5B00 (B:141-237)
1b: CATH_3eq5E00 (E:142-236)
1c: CATH_3eq5G00 (G:141-235)
1d: CATH_3eq5I00 (I:144-237)
1e: CATH_3eq5L00 (L:144-237)
1f: CATH_3eq5A00 (A:135-236)
1g: CATH_3eq5C00 (C:141-237)
1h: CATH_3eq5F00 (F:141-238)
1i: CATH_3eq5D00 (D:141-236)
1j: CATH_3eq5H00 (H:142-237)
1k: CATH_3eq5J00 (J:143-238)
1l: CATH_3eq5K00 (K:143-238)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mlu1-box Binding Protein; DNA-binding Domain
(6)
Homologous Superfamily
:
Putative DNA-binding domain
(3)
Human (Homo sapiens)
(3)
1a
3eq5B00
B:141-237
1b
3eq5E00
E:142-236
1c
3eq5G00
G:141-235
1d
3eq5I00
I:144-237
1e
3eq5L00
L:144-237
1f
3eq5A00
A:135-236
1g
3eq5C00
C:141-237
1h
3eq5F00
F:141-238
1i
3eq5D00
D:141-236
1j
3eq5H00
H:142-237
1k
3eq5J00
J:143-238
1l
3eq5K00
K:143-238
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (196 KB)
Header - Asym.Unit
Biol.Unit 1 (20 KB)
Header - Biol.Unit 1
Biol.Unit 10 (19 KB)
Header - Biol.Unit 10
Biol.Unit 11 (18 KB)
Header - Biol.Unit 11
Biol.Unit 12 (18 KB)
Header - Biol.Unit 12
Biol.Unit 2 (19 KB)
Header - Biol.Unit 2
Biol.Unit 3 (18 KB)
Header - Biol.Unit 3
Biol.Unit 4 (18 KB)
Header - Biol.Unit 4
Biol.Unit 5 (18 KB)
Header - Biol.Unit 5
Biol.Unit 6 (19 KB)
Header - Biol.Unit 6
Biol.Unit 7 (17 KB)
Header - Biol.Unit 7
Biol.Unit 8 (18 KB)
Header - Biol.Unit 8
Biol.Unit 9 (18 KB)
Header - Biol.Unit 9
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3EQ5
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help