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3BTC
Biol. Unit 3
Info
Asym.Unit (133 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (503 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF QACR(E57Q) BOUND TO MALACHITE GREEN
Authors
:
M. A. Schumacher, J. T. Schuman, R. G. Brennan
Date
:
28 Dec 07 (Deposition) - 12 Aug 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: A,B,D,E (4x)
Keywords
:
Qacr, Multidrug Binding, Malachite Green, Dye, Dna-Binding, Plasmid, Repressor, Transcription, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. M. Peters, J. T. Schuman, R. A. Skurray, M. H. Brown, R. G. Brennan, M. A. Schumacher
Qacr-Cation Recognition Is Mediated By A Redundancy Of Residues Capable Of Charge Neutralization
Biochemistry V. 47 8122 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MALACHITE GREEN (MGRa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:2 , LYS A:6
BINDING SITE FOR RESIDUE SO4 A 599
02
AC2
SOFTWARE
LYS A:4 , TYR A:41 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 299
03
AC3
SOFTWARE
THR D:25 , TYR D:40 , LYS D:46
BINDING SITE FOR RESIDUE SO4 D 899
04
AC4
SOFTWARE
LYS E:36 , TYR E:40 , THR E:45 , LYS E:46
BINDING SITE FOR RESIDUE SO4 E 900
05
AC5
SOFTWARE
LYS B:66 , LEU D:3 , ASN D:38 , HIS D:42
BINDING SITE FOR RESIDUE SO4 D 269
06
AC6
SOFTWARE
THR D:24 , GLY D:26
BINDING SITE FOR RESIDUE SO4 D 270
07
AC7
SOFTWARE
TYR E:20 , THR E:45 , LYS E:46 , GLU E:47 , TYR E:106
BINDING SITE FOR RESIDUE SO4 E 249
08
AC8
SOFTWARE
ASN A:2 , LEU A:3 , LYS A:4 , ASN A:38 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 279
09
AC9
SOFTWARE
LYS B:67 , LYS D:60 , TYR D:91
BINDING SITE FOR RESIDUE SO4 B 499
10
BC1
SOFTWARE
LYS E:12 , ILE E:53 , ILE E:56 , GLN E:57 , LYS E:60
BINDING SITE FOR RESIDUE SO4 E 399
11
BC2
SOFTWARE
ASN E:2 , ASP E:5 , LYS E:6
BINDING SITE FOR RESIDUE SO4 E 799
12
BC3
SOFTWARE
LYS A:36 , LYS E:60
BINDING SITE FOR RESIDUE SO4 A 699
13
BC4
SOFTWARE
LYS B:60 , TYR B:91 , LYS D:67
BINDING SITE FOR RESIDUE SO4 B 600
14
BC5
SOFTWARE
HIS A:128 , LYS A:132
BINDING SITE FOR RESIDUE SO4 A 801
15
BC6
SOFTWARE
HIS D:164 , GLU D:165 , TYR E:107
BINDING SITE FOR RESIDUE SO4 D 280
16
BC7
SOFTWARE
HIS E:128 , LYS E:132
BINDING SITE FOR RESIDUE SO4 E 239
17
BC8
SOFTWARE
TYR A:103 , GLU A:120 , TYR A:123 , ILE A:124 , ALA A:153 , ASN A:154 , ASN A:157
BINDING SITE FOR RESIDUE MGR A 200
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49,D:19-49,E:19-49)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAM
19-49
16
A:19-49
B:19-49
D:19-49
E:19-49
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3btca1 (A:2-72)
1b: SCOP_d3btcb1 (B:2-72)
1c: SCOP_d3btcd1 (D:2-72)
1d: SCOP_d3btce1 (E:2-72)
2a: SCOP_d3btca2 (A:73-187)
2b: SCOP_d3btcb2 (B:73-187)
2c: SCOP_d3btcd2 (D:73-187)
2d: SCOP_d3btce2 (E:73-187)
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)
(
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d3btca1
A:2-72
1b
d3btcb1
B:2-72
1c
d3btcd1
D:2-72
1d
d3btce1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d3btca2
A:73-187
2b
d3btcb2
B:73-187
2c
d3btcd2
D:73-187
2d
d3btce2
E:73-187
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3btcA01 (A:2-50)
1b: CATH_3btcD01 (D:2-50)
1c: CATH_3btcE01 (E:2-50)
1d: CATH_3btcB01 (B:2-50)
2a: CATH_3btcA02 (A:51-187)
2b: CATH_3btcB02 (B:51-187)
2c: CATH_3btcD02 (D:51-187)
2d: CATH_3btcE02 (E:51-187)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Strain: mu50.
(5)
1a
3btcA01
A:2-50
1b
3btcD01
D:2-50
1c
3btcE01
E:2-50
1d
3btcB01
B:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Strain: mu50.
(5)
2a
3btcA02
A:51-187
2b
3btcB02
B:51-187
2c
3btcD02
D:51-187
2d
3btcE02
E:51-187
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Pfam Domains
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all PFAM domains
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Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
Asymmetric Unit 7
Asymmetric Unit 8
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Asym.Unit (133 KB)
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