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3BR5
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (482 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF RHODAMINE 6G BOUND TO QACR(E90Q), A MUTANT OF A MULTIDRUG BINDING TRANSCRIPTIONAL REPRESSOR
Authors
:
B. E. Brooks
Date
:
20 Dec 07 (Deposition) - 23 Dec 08 (Release) - 23 Dec 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: A,B,D,E (4x)
Keywords
:
Qacr, Multidrug Resistance, Tetr, Rhodamine 6G, Dna-Binding, Plasmid, Repressor, Transcription, Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. E. Brooks, K. M. Hardie, M. H. Brown, R. A. Skurray, R. G. Brennan
Formal Electrostatic Interactions Do Not Govern Qacr-Cation Affinity
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 27)
Info
All Hetero Components
1a: RHODAMINE 6G (RHQa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
RHQ
1
Ligand/Ion
RHODAMINE 6G
2
SO4
26
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:30 , GLU A:33 , GLN E:64 , GLN E:90
BINDING SITE FOR RESIDUE SO4 A 501
02
AC2
SOFTWARE
THR D:23 , THR D:24 , THR D:25 , LYS D:46
BINDING SITE FOR RESIDUE SO4 D 502
03
AC3
SOFTWARE
LEU A:3 , LYS A:4 , ASN A:38 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
LYS A:4 , TYR A:41 , LYS E:17
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
GLN B:90 , TYR B:91 , LYS D:60 , GLU D:63 , GLN D:64 , TYR D:91 , SO4 D:508
BINDING SITE FOR RESIDUE SO4 B 505
06
AC6
SOFTWARE
ARG E:76 , TYR E:80 , GLN E:180
BINDING SITE FOR RESIDUE SO4 A 506
07
AC7
SOFTWARE
HIS A:128 , LYS A:132
BINDING SITE FOR RESIDUE SO4 A 507
08
AC8
SOFTWARE
GLN B:64 , GLN B:90 , TYR B:91 , SO4 B:505 , GLN D:64 , GLN D:90 , TYR D:91
BINDING SITE FOR RESIDUE SO4 D 508
09
AC9
SOFTWARE
ILE D:142 , ASN D:143 , ASP D:144 , LYS E:177
BINDING SITE FOR RESIDUE SO4 D 509
10
BC1
SOFTWARE
LYS A:6
BINDING SITE FOR RESIDUE SO4 A 511
11
BC2
SOFTWARE
THR E:24 , GLY E:26 , GLU E:27 , LYS E:36
BINDING SITE FOR RESIDUE SO4 E 512
12
BC3
SOFTWARE
LEU E:3 , ASN E:38 , HIS E:42
BINDING SITE FOR RESIDUE SO4 E 513
13
BC4
SOFTWARE
THR E:25 , LYS E:36 , TYR E:40 , LYS E:46 , GLU E:47
BINDING SITE FOR RESIDUE SO4 E 514
14
BC5
SOFTWARE
HIS E:128 , LYS E:132
BINDING SITE FOR RESIDUE SO4 E 515
15
BC6
SOFTWARE
SER D:141 , SER D:187
BINDING SITE FOR RESIDUE SO4 D 516
16
BC7
SOFTWARE
HIS B:128
BINDING SITE FOR RESIDUE SO4 B 506
17
BC8
SOFTWARE
ASN A:143 , ASP A:144 , VAL A:145 , ASN A:146 , ALA A:147 , HOH A:519
BINDING SITE FOR RESIDUE SO4 A 512
18
BC9
SOFTWARE
LYS A:36 , TYR A:40 , ASN E:2 , ASP E:5
BINDING SITE FOR RESIDUE SO4 A 513
19
CC1
SOFTWARE
THR A:24 , GLY A:26 , SO4 A:515
BINDING SITE FOR RESIDUE SO4 A 514
20
CC2
SOFTWARE
THR A:25 , GLY A:26 , LYS A:36 , SO4 A:514
BINDING SITE FOR RESIDUE SO4 A 515
21
CC3
SOFTWARE
THR A:109 , ASN A:110 , SER A:111
BINDING SITE FOR RESIDUE SO4 A 516
22
CC4
SOFTWARE
TYR A:107 , PHE B:15 , ILE B:16 , PRO B:94 , LEU B:95 , GLN B:96 , ASN B:97 , ALA B:98
BINDING SITE FOR RESIDUE SO4 B 507
23
CC5
SOFTWARE
TYR D:103 , PHE E:162 , THR E:163 , HIS E:164 , GLU E:165 , GLN E:166 , HOH E:518
BINDING SITE FOR RESIDUE SO4 E 516
24
CC6
SOFTWARE
ASN B:143 , ASP B:144 , VAL B:145 , ASN B:146 , ALA B:147
BINDING SITE FOR RESIDUE SO4 B 508
25
CC7
SOFTWARE
THR A:23 , THR A:24 , THR A:25 , LYS A:46
BINDING SITE FOR RESIDUE SO4 A 517
26
CC8
SOFTWARE
LYS D:177 , ASN E:143 , ASP E:144
BINDING SITE FOR RESIDUE SO4 E 517
27
CC9
SOFTWARE
LEU A:54 , GLU A:57 , GLU A:58 , TRP A:61 , GLN A:64 , THR A:89 , GLN A:90 , TYR A:93 , GLN A:96 , ILE A:99 , TYR A:103 , MET A:116 , LEU A:119 , GLU A:120 , TYR A:123 , ASN A:154 , ASN A:157 , VAL A:160 , PHE B:162
BINDING SITE FOR RESIDUE RHQ A 201
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49,D:19-49,E:19-49)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAM
19-49
4
A:19-49
B:19-49
D:19-49
E:19-49
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3br5a1 (A:2-72)
1b: SCOP_d3br5b1 (B:3-72)
1c: SCOP_d3br5d1 (D:4-72)
1d: SCOP_d3br5e1 (E:2-72)
2a: SCOP_d3br5a2 (A:73-187)
2b: SCOP_d3br5b2 (B:73-187)
2c: SCOP_d3br5d2 (D:73-187)
2d: SCOP_d3br5e2 (E:73-187)
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Classes
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)
(
)
Folds
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d3br5a1
A:2-72
1b
d3br5b1
B:3-72
1c
d3br5d1
D:4-72
1d
d3br5e1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d3br5a2
A:73-187
2b
d3br5b2
B:73-187
2c
d3br5d2
D:73-187
2d
d3br5e2
E:73-187
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3br5A01 (A:2-50)
1b: CATH_3br5D01 (D:4-50)
1c: CATH_3br5B01 (B:3-50)
1d: CATH_3br5E01 (E:2-50)
2a: CATH_3br5E02 (E:51-187)
2b: CATH_3br5B02 (B:51-187)
2c: CATH_3br5D02 (D:51-187)
2d: CATH_3br5A02 (A:51-187)
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Topologies
(
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280. Strain: mu50.
(7)
1a
3br5A01
A:2-50
1b
3br5D01
D:4-50
1c
3br5B01
B:3-50
1d
3br5E01
E:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280. Strain: mu50.
(7)
2a
3br5E02
E:51-187
2b
3br5B02
B:51-187
2c
3br5D02
D:51-187
2d
3br5A02
A:51-187
[
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]
Pfam Domains
(0, 0)
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Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (482 KB)
Header - Biol.Unit 3
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