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3ABK
Biol. Unit 1
Info
Asym.Unit (683 KB)
Biol.Unit 1 (336 KB)
Biol.Unit 2 (333 KB)
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(1)
Title
:
BOVINE HEART CYTOCHROME C OXIDASE AT THE NO-BOUND FULLY REDUCED STATE (50K)
Authors
:
K. Ohta, K. Muramoto, K. Shinzawa-Itoh, E. Yamashita, S. Yoshikawa, T.
Date
:
16 Dec 09 (Deposition) - 09 Mar 10 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M (1x)
Biol. Unit 2: N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase, Electron Transport, Formylation, Heme, Iron, Membrane, Mitochondrion, Mitochondrion Inner Membrane, Respiratory Chain, Transmembrane, Transport, Transit Peptide, Isopeptide Bond
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ohta, K. Muramoto, K. Shinzawa-Itoh, E. Yamashita, S. Yoshikawa, T. Tsukihara
X-Ray Structure Of The No-Bound Cu(B) In Bovine Cytochrome Oxidase
Acta Crystallogr. , Sect. F V. 66 251 2010
[
close entry info
]
Hetero Components
(13, 27)
Info
All Hetero Components
01a: CARDIOLIPIN (CDLa)
01b: CARDIOLIPIN (CDLb)
01c: CARDIOLIPIN (CDLc)
01d: CARDIOLIPIN (CDLd)
02a: CHOLIC ACID (CHDa)
02b: CHOLIC ACID (CHDb)
02c: CHOLIC ACID (CHDc)
02d: CHOLIC ACID (CHDd)
02e: CHOLIC ACID (CHDe)
02f: CHOLIC ACID (CHDf)
02g: CHOLIC ACID (CHDg)
02h: CHOLIC ACID (CHDh)
04a: DINUCLEAR COPPER ION (CUAa)
04b: DINUCLEAR COPPER ION (CUAb)
03a: COPPER (II) ION (CUa)
04b: COPPER (II) ION (CUb)
05a: DECYL-BETA-D-MALTOPYRANOSIDE (DMUa)
05b: DECYL-BETA-D-MALTOPYRANOSIDE (DMUb)
05c: DECYL-BETA-D-MALTOPYRANOSIDE (DMUc)
05d: DECYL-BETA-D-MALTOPYRANOSIDE (DMUd)
06a: N-FORMYLMETHIONINE (FMEa)
06b: N-FORMYLMETHIONINE (FMEb)
06c: N-FORMYLMETHIONINE (FMEc)
06d: N-FORMYLMETHIONINE (FMEd)
07a: HEME-A (HEAa)
07b: HEME-A (HEAb)
07c: HEME-A (HEAc)
07d: HEME-A (HEAd)
08a: MAGNESIUM ION (MGa)
08b: MAGNESIUM ION (MGb)
09a: SODIUM ION (NAa)
09b: SODIUM ION (NAb)
10a: NITRIC OXIDE (NOa)
10b: NITRIC OXIDE (NOb)
11a: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKa)
11b: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKb)
11c: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKc)
11d: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKd)
11e: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKe)
11f: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)P... (PEKf)
12a: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVa)
12b: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVb)
12c: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVc)
12d: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVd)
12e: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVe)
12f: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVf)
12g: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVg)
12h: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPY... (PGVh)
13a: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCa)
13b: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIME... (PSCb)
14a: N-ACETYL-SERINE (SACa)
14b: N-ACETYL-SERINE (SACb)
15a: TRISTEAROYLGLYCEROL (TGLa)
15b: TRISTEAROYLGLYCEROL (TGLb)
15c: TRISTEAROYLGLYCEROL (TGLc)
15d: TRISTEAROYLGLYCEROL (TGLd)
15e: TRISTEAROYLGLYCEROL (TGLe)
15f: TRISTEAROYLGLYCEROL (TGLf)
16a: PHOSPHOTHREONINE (TPOa)
16b: PHOSPHOTHREONINE (TPOb)
17a: UNKNOWN ATOM OR ION (UNXa)
17b: UNKNOWN ATOM OR ION (UNXb)
18a: ZINC ION (ZNa)
18b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CDL
2
Ligand/Ion
CARDIOLIPIN
2
CHD
4
Ligand/Ion
CHOLIC ACID
3
CU
-1
Ligand/Ion
COPPER (II) ION
4
CUA
1
Ligand/Ion
DINUCLEAR COPPER ION
5
DMU
2
Ligand/Ion
DECYL-BETA-D-MALTOPYRANOSIDE
6
FME
2
Mod. Amino Acid
N-FORMYLMETHIONINE
7
HEA
2
Ligand/Ion
HEME-A
8
MG
-1
Ligand/Ion
MAGNESIUM ION
9
NA
-1
Ligand/Ion
SODIUM ION
10
NO
-1
Ligand/Ion
NITRIC OXIDE
11
PEK
3
Ligand/Ion
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
12
PGV
4
Ligand/Ion
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
13
PSC
1
Ligand/Ion
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE
14
SAC
1
Mod. Amino Acid
N-ACETYL-SERINE
15
TGL
3
Ligand/Ion
TRISTEAROYLGLYCEROL
16
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
17
UNX
1
Ligand/Ion
UNKNOWN ATOM OR ION
18
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: EC2 (SOFTWARE)
29: EC5 (SOFTWARE)
30: FC3 (SOFTWARE)
31: FC4 (SOFTWARE)
32: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:28 , THR A:31 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , VAL A:58 , HIS A:61 , ALA A:62 , MET A:65 , ILE A:66 , VAL A:70 , ILE A:73 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , LEU A:381 , SER A:382 , VAL A:386 , MET A:417 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , TYR A:440 , VAL A:465 , HOH A:2045 , HOH A:2283 , HOH A:2700
BINDING SITE FOR RESIDUE HEA A 515
02
AC2
SOFTWARE
TRP A:126 , TRP A:236 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , THR A:316 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , VAL A:373 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , NO A:520 , HOH A:2081 , HOH A:2183 , HOH A:2272 , HOH A:2341 , ILE B:34
BINDING SITE FOR RESIDUE HEA A 516
03
AC3
SOFTWARE
HIS A:240 , VAL A:243 , HIS A:290 , HIS A:291 , HEA A:516 , CU A:517
BINDING SITE FOR RESIDUE NO A 520
04
AC4
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291 , NO A:520
BINDING SITE FOR RESIDUE CU A 517
05
AC5
SOFTWARE
HIS A:368 , ASP A:369 , HOH A:2267 , GLU B:198 , HOH B:2266 , HOH B:2268
BINDING SITE FOR RESIDUE MG A 518
06
AC6
SOFTWARE
GLU A:40 , GLY A:45 , SER A:441 , HOH A:2258
BINDING SITE FOR RESIDUE NA A 519
07
AC7
SOFTWARE
ASN A:406 , THR A:408 , TRP A:409 , HOH A:4656 , THR D:80 , PHE D:87 , HIS K:10 , PRO M:12 , GLN M:15 , ALA M:16 , LEU M:19 , SER M:20
BINDING SITE FOR RESIDUE PGV A 524
08
AC8
SOFTWARE
PHE A:94 , PRO A:95 , ARG A:96 , MET A:97 , HOH A:2289 , HIS C:9 , ASN C:50 , TRP C:57 , TRP C:58 , GLU C:64 , HIS C:71 , GLY C:82 , GLU C:90 , PEK C:264 , HOH C:2085
BINDING SITE FOR RESIDUE PGV A 521
09
AC9
SOFTWARE
HIS B:161 , CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , MET B:207
BINDING SITE FOR RESIDUE CUA B 228
10
BC1
SOFTWARE
TYR A:379 , ASN A:422 , HIS A:429 , LEU A:433 , LEU B:7 , LEU B:28 , VAL B:31 , PHE B:32 , SER B:35 , ARG I:43 , HOH I:2606
BINDING SITE FOR RESIDUE TGL B 521
11
BC2
SOFTWARE
HIS A:328 , HOH A:4171 , HIS B:52 , MET B:56 , ASP B:57 , TRP B:65 , LEU B:68 , HOH B:2042 , ASP E:8 , PHE E:11 , ASP E:40 , LEU E:41 , HOH E:4668 , ARG I:10 , ALA I:14 , HOH I:2588
BINDING SITE FOR RESIDUE PSC B 229
12
BC3
SOFTWARE
MET A:271 , TRP A:275 , GLN B:59 , GLU B:62 , THR B:63 , THR B:66 , HOH B:2605 , ARG T:14 , ARG T:17 , GLY T:22 , PEK T:1265 , HOH T:3446
BINDING SITE FOR RESIDUE CHD B 1085
13
BC4
SOFTWARE
HIS A:233 , ASP A:300 , THR A:301 , TYR A:304 , TRP C:99 , HIS C:103 , PGV C:268 , HOH C:4200 , HOH T:4268
BINDING SITE FOR RESIDUE CHD C 525
14
BC5
SOFTWARE
PGV A:521 , TYR C:181 , TYR C:182 , ALA C:184 , PHE C:186 , THR C:187 , ILE C:188 , PHE C:198 , GLY C:202 , THR G:68 , PHE G:69 , PHE G:70 , HIS G:71 , ASN G:76
BINDING SITE FOR RESIDUE PEK C 264
15
BC6
SOFTWARE
LYS C:157 , HIS C:158 , GLN C:161 , ALA F:1 , LYS G:5 , ARG G:17 , PHE G:21 , GLY G:22 , CDL G:269 , HOH G:4791 , GLN O:59 , CHD O:229
BINDING SITE FOR RESIDUE PEK C 265
16
BC7
SOFTWARE
MET C:54 , TRP C:58 , VAL C:61 , SER C:65 , THR C:66 , PHE C:214 , ARG C:221 , HIS C:226 , PHE C:227 , THR C:228 , HIS C:231 , HIS C:232 , PHE C:233 , GLY C:234 , CDL C:270 , HOH C:2065 , HOH C:2253 , HOH C:2559
BINDING SITE FOR RESIDUE PGV C 267
17
BC8
SOFTWARE
THR C:95 , TRP C:99 , HIS C:103 , ALA C:107 , CHD C:525 , HOH C:4164 , HOH C:4333 , HOH C:4342 , HOH C:4378 , HOH C:4697 , ASN H:24
BINDING SITE FOR RESIDUE PGV C 268
18
BC9
SOFTWARE
THR C:48 , MET C:51 , LEU C:52 , TYR C:55 , ARG C:59 , ARG C:63 , PHE C:67 , THR C:213 , PHE C:220 , LYS C:224 , HIS C:226 , PGV C:267 , HOH C:2144 , LYS J:8 , PHE J:12 , HOH J:4496
BINDING SITE FOR RESIDUE CDL C 270
19
CC1
SOFTWARE
ARG C:156 , PHE C:164 , LEU C:223 , HOH C:4553 , PHE J:1
BINDING SITE FOR RESIDUE CHD C 271
20
CC2
SOFTWARE
TRP C:34 , MET C:40 , SER G:61 , GLY G:63 , PHE G:69
BINDING SITE FOR RESIDUE DMU C 272
21
CC3
SOFTWARE
TRP A:334 , GLY A:343 , HOH A:4770 , ILE B:42 , HOH B:2562 , HOH B:4390 , ARG D:73 , THR D:75 , GLU D:77 , TRP D:78 , HOH D:4105 , ARG I:16
BINDING SITE FOR RESIDUE TGL D 523
22
CC4
SOFTWARE
CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85
BINDING SITE FOR RESIDUE ZN F 99
23
CC5
SOFTWARE
LEU C:127 , PEK C:265 , SER G:27 , CYS G:31 , ASN G:34 , HIS G:38 , HOH G:4479 , HOH G:4791 , PHE N:282 , ILE N:286 , ASP N:300 , TYR N:304 , SER N:307 , ILE N:311 , ALA O:77 , LEU O:78 , LEU O:81 , TYR O:85 , CHD P:1525
BINDING SITE FOR RESIDUE CDL G 269
24
CC6
SOFTWARE
SER G:2 , ALA G:3 , LYS G:5 , GLY G:6 , HIS G:8 , HOH G:4322 , LYS P:77 , ARG P:80 , ILE P:84 , LEU P:85 , THR P:95 , VAL P:247 , PHE P:251
BINDING SITE FOR RESIDUE PEK G 1263
25
CC7
SOFTWARE
ILE A:3 , PHE A:8 , TYR J:32 , ARG J:33 , MET J:36 , THR J:37
BINDING SITE FOR RESIDUE CHD J 60
26
CC8
SOFTWARE
THR A:17 , LEU A:18 , LEU A:21 , TRP A:25 , PRO A:106 , PHE A:400 , ILE L:11 , PRO L:12 , PHE L:13 , SER L:14 , ARG L:20 , MET L:24 , PHE L:29
BINDING SITE FOR RESIDUE TGL L 522
27
CC9
SOFTWARE
TRP D:98 , LEU M:27 , LEU M:28 , GLY M:31 , TRP M:32 , TYR M:35 , HIS M:36
BINDING SITE FOR RESIDUE DMU M 526
28
EC2
SOFTWARE
PEK C:265 , ARG G:14 , ARG G:17 , PHE G:21 , GLY G:22 , HOH G:2446 , MET N:271 , GLY N:272 , TRP N:275 , GLU O:62 , THR O:63 , THR O:66 , HOH O:3605 , HOH O:4420
BINDING SITE FOR RESIDUE CHD O 229
29
EC5
SOFTWARE
CDL G:269 , HIS N:233 , ASP N:300 , THR N:301 , TYR N:304 , TRP P:99 , HIS P:103 , HOH P:4121 , PGV U:1268 , HOH U:4495
BINDING SITE FOR RESIDUE CHD P 1525
30
FC3
SOFTWARE
ARG C:80 , ILE C:84 , LEU C:85 , VAL C:91 , TRP C:240 , SER T:2 , ALA T:3 , LYS T:5 , GLY T:6 , CDL T:1269
BINDING SITE FOR RESIDUE PEK T 263
31
FC4
SOFTWARE
TRP A:275 , GLN B:59 , CHD B:1085 , LYS P:157 , HIS P:158 , THR P:168 , TYR P:172 , HOH P:4050 , HOH P:4419 , ALA S:1 , ARG T:17 , PHE T:21 , GLY T:22 , CDL T:1269 , HOH T:4407
BINDING SITE FOR RESIDUE PEK T 1265
32
FC5
SOFTWARE
ILE A:286 , ASP A:300 , TYR A:304 , SER A:307 , ILE A:311 , ALA B:70 , ILE B:74 , ALA B:77 , LEU B:78 , LEU B:81 , ARG B:82 , TYR B:85 , LEU P:127 , LEU P:131 , THR P:134 , VAL P:142 , LEU T:23 , SER T:27 , CYS T:31 , ASN T:34 , LEU T:37 , HIS T:38 , PEK T:263 , PEK T:1265 , HOH T:4268
BINDING SITE FOR RESIDUE CDL T 1269
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(10, 10)
Info
All PROSITE Patterns/Profiles
01: COX2_TM (B:1-91)
02: COX1 (A:1-514)
03: COX3 (C:4-261)
04: CHCH (H:26-72)
05: COX5B_2 (F:1-98)
06: COX6A (G:55-72)
07: COX2_CUA (B:92-225)
08: COX5B_1 (F:69-91)
09: COX2 (B:159-207)
10: COX1_CUB (A:236-291)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
1
B:1-91
-
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
1
A:1-514
-
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
1
C:4-261
-
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
1
H:26-72
-
5
COX5B_2
PS51359
Cytochrome c oxidase subunit Vb, zinc binding domain profile.
COX5B_BOVIN
32-129
1
F:1-98
-
6
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
1
G:55-72
-
7
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
1
B:92-225
-
8
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
1
F:69-91
-
9
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
1
B:159-207
-
10
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
1
A:236-291
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(14, 28)
Info
All SCOP Domains
01a: SCOP_d3abke_ (E:)
01b: SCOP_d3abkr_ (R:)
02a: SCOP_d3abkh_ (H:)
02b: SCOP_d3abku_ (U:)
03a: SCOP_d3abkb2 (B:91-227)
03b: SCOP_d3abko2 (O:91-227)
04a: SCOP_d3abka_ (A:)
04b: SCOP_d3abkn_ (N:)
05a: SCOP_d3abkc_ (C:)
05b: SCOP_d3abkp_ (P:)
06a: SCOP_d3abkd_ (D:)
06b: SCOP_d3abkq_ (Q:)
07a: SCOP_d3abkg_ (G:)
07b: SCOP_d3abkt_ (T:)
08a: SCOP_d3abki_ (I:)
08b: SCOP_d3abkv_ (V:)
09a: SCOP_d3abkj_ (J:)
09b: SCOP_d3abkw_ (W:)
10a: SCOP_d3abkk_ (K:)
10b: SCOP_d3abkx_ (X:)
11a: SCOP_d3abkl_ (L:)
11b: SCOP_d3abky_ (Y:)
12a: SCOP_d3abkm_ (M:)
12b: SCOP_d3abkz_ (Z:)
13a: SCOP_d3abkb1 (B:1-90)
13b: SCOP_d3abko1 (O:1-90)
14a: SCOP_d3abkf_ (F:)
14b: SCOP_d3abks_ (S:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d3abke_
E:
01b
d3abkr_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d3abkh_
H:
02b
d3abku_
U:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Cow (Bos taurus) [TaxId: 9913]
(24)
03a
d3abkb2
B:91-227
03b
d3abko2
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
automated matches
(24)
Cow (Bos taurus) [TaxId: 9913]
(18)
04a
d3abka_
A:
04b
d3abkn_
N:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
05a
d3abkc_
C:
05b
d3abkp_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
06a
d3abkd_
D:
06b
d3abkq_
Q:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
07a
d3abkg_
G:
07b
d3abkt_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
08a
d3abki_
I:
08b
d3abkv_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
09a
d3abkj_
J:
09b
d3abkw_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
10a
d3abkk_
K:
10b
d3abkx_
X:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
11a
d3abkl_
L:
11b
d3abky_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
automated matches
(18)
Cow (Bos taurus) [TaxId: 9913]
(18)
12a
d3abkm_
M:
12b
d3abkz_
Z:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
Cytochrome c oxidase subunit II-like, transmembrane region
(57)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit II
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
13a
d3abkb1
B:1-90
13b
d3abko1
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
14a
d3abkf_
F:
14b
d3abks_
S:
[
close SCOP info
]
CATH Domains
(15, 30)
Info
all CATH domains
01a: CATH_3abkG00 (G:1-84)
01b: CATH_3abkT00 (T:1-84)
02a: CATH_3abkI00 (I:2-73)
02b: CATH_3abkV00 (V:2-73)
03a: CATH_3abkJ00 (J:1-58)
03b: CATH_3abkW00 (W:1-58)
04a: CATH_3abkK00 (K:6-54)
04b: CATH_3abkX00 (X:6-54)
05a: CATH_3abkL00 (L:2-47)
05b: CATH_3abkY00 (Y:2-47)
06a: CATH_3abkM00 (M:1-43)
06b: CATH_3abkZ00 (Z:1-43)
07a: CATH_3abkE00 (E:5-109)
07b: CATH_3abkR00 (R:5-109)
08a: CATH_3abkH00 (H:7-85)
08b: CATH_3abkU00 (U:7-85)
09a: CATH_3abkD00 (D:4-147)
09b: CATH_3abkQ00 (Q:4-147)
10a: CATH_3abkC01 (C:3-70)
10b: CATH_3abkP01 (P:3-70)
11a: CATH_3abkB01 (B:2-91)
11b: CATH_3abkO01 (O:2-91)
12a: CATH_3abkA00 (A:2-514)
12b: CATH_3abkN00 (N:2-514)
13a: CATH_3abkC02 (C:71-261)
13b: CATH_3abkP02 (P:71-261)
14a: CATH_3abkF00 (F:1-98)
14b: CATH_3abkS00 (S:1-98)
15a: CATH_3abkB02 (B:92-227)
15b: CATH_3abkO02 (O:92-227)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Cytochrome C Oxidase; Chain G
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain G
(22)
Bovine (Bos taurus)
(7)
01a
3abkG00
G:1-84
01b
3abkT00
T:1-84
Topology
:
Cytochrome C Oxidase; Chain I
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain I
(22)
Bovine (Bos taurus)
(7)
02a
3abkI00
I:2-73
02b
3abkV00
V:2-73
Topology
:
Cytochrome C Oxidase; Chain J
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain J
(22)
Bovine (Bos taurus)
(7)
03a
3abkJ00
J:1-58
03b
3abkW00
W:1-58
Topology
:
Cytochrome C Oxidase; Chain K
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain K
(22)
Bovine (Bos taurus)
(7)
04a
3abkK00
K:6-54
04b
3abkX00
X:6-54
Topology
:
Cytochrome C Oxidase; Chain L
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain L
(22)
Bovine (Bos taurus)
(7)
05a
3abkL00
L:2-47
05b
3abkY00
Y:2-47
Topology
:
Cytochrome C Oxidase; Chain M
(30)
Homologous Superfamily
:
Cytochrome C Oxidase, chain M
(29)
Bovine (Bos taurus)
(7)
06a
3abkM00
M:1-43
06b
3abkZ00
Z:1-43
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.40, no name defined]
(22)
Bovine (Bos taurus)
(7)
07a
3abkE00
E:5-109
07b
3abkR00
R:5-109
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Cytochrome C oxidase subunit h
(22)
Bovine (Bos taurus)
(7)
08a
3abkH00
H:7-85
08b
3abkU00
U:7-85
Topology
:
Cytochrome C Oxidase; Chain D
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain D
(22)
Bovine (Bos taurus)
(7)
09a
3abkD00
D:4-147
09b
3abkQ00
Q:4-147
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Bovine (Bos taurus)
(7)
10a
3abkC01
C:3-70
10b
3abkP01
P:3-70
Homologous Superfamily
:
[code=1.10.287.90, no name defined]
(33)
Bovine (Bos taurus)
(7)
11a
3abkB01
B:2-91
11b
3abkO01
O:2-91
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome C Oxidase; Chain A
(41)
Homologous Superfamily
:
Cytochrome C Oxidase, chain A
(41)
Bovine (Bos taurus)
(7)
12a
3abkA00
A:2-514
12b
3abkN00
N:2-514
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.80, no name defined]
(26)
Bovine (Bos taurus)
(7)
13a
3abkC02
C:71-261
13b
3abkP02
P:71-261
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Cytochrome C Oxidase; Chain F
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain F
(22)
Bovine (Bos taurus)
(7)
14a
3abkF00
F:1-98
14b
3abkS00
S:1-98
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Bovine (Bos taurus)
(7)
15a
3abkB02
B:92-227
15b
3abkO02
O:92-227
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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