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2XGP
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (94 KB)
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(1)
Title
:
YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-2-ACETYLAMINOFLUORENE CONTAINING DNA
Authors
:
S. Scheider, K. Lammens, S. Schorr, K. P. Hopfner, T. Carell
Date
:
07 Jun 10 (Deposition) - 03 Nov 10 (Release) - 15 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,P,Q,T,U
Biol. Unit 1: B,Q,U (1x)
Biol. Unit 2: A,P,T (1x)
Keywords
:
Transferase-Dna Complex, Translesion Dna Synthesis, Dna-Binding, Dna Damage
(Keyword Search:
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)
Reference
:
S. Schorr, S. Schneider, K. Lammens, K. P. Hopfner, T. Carell
Mechanism Of Replication Blocking And Bypass Of Y-Family Polymerase Eta By Bulky Acetylaminofluorene Dna Adducts.
Proc. Natl. Acad. Sci. Usa V. 107 20720 2010
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-Y... (8FGa)
1b: N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-Y... (8FGb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
8FG
2
Mod. Nucleotide
N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2-ACETYLAMINOFLUORENE
2
CA
8
Ligand/Ion
CALCIUM ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:155 , CA A:1512
BINDING SITE FOR RESIDUE CA A1511
2
AC2
SOFTWARE
ASP A:30 , ASP A:155 , GLU A:156 , CA A:1511
BINDING SITE FOR RESIDUE CA A1512
3
AC3
SOFTWARE
THR A:231 , ASP A:289 , HOH A:2026
BINDING SITE FOR RESIDUE CA A1513
4
AC4
SOFTWARE
ASN A:32 , THR A:259 , THR A:260 , SER A:261 , PRO A:280 , ASP A:281
BINDING SITE FOR RESIDUE CA A1514
5
AC5
SOFTWARE
ASP B:30 , ASP B:155 , GLU B:156 , CA B:1512
BINDING SITE FOR RESIDUE CA B1511
6
AC6
SOFTWARE
ASP B:155 , GLU B:156 , CA B:1511
BINDING SITE FOR RESIDUE CA B1512
7
AC7
SOFTWARE
LYS B:3 , THR B:231 , ASP B:289
BINDING SITE FOR RESIDUE CA B1513
8
AC8
SOFTWARE
GLY B:98 , GLU B:417
BINDING SITE FOR RESIDUE CA B1514
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: UMUC (A:26-309,B:26-309)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UMUC
PS50173
UmuC domain profile.
POLH_YEAST
26-309
2
A:26-309
B:26-309
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:1-510 | B:1-510)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR419W
1
YDR419W.1
IV:1303167-1305065
1899
POLH_YEAST
1-632
632
2
A:1-510
B:1-510
510
510
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2xgpa2 (A:390-510)
1b: SCOP_d2xgpb2 (B:390-510)
2a: SCOP_d2xgpa1 (A:0-389)
2b: SCOP_d2xgpb1 (B:-1-389)
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Protein Domains
(
)
(
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Superfamily
:
Lesion bypass DNA polymerase (Y-family), little finger domain
(103)
Family
:
automated matches
(41)
Protein domain
:
automated matches
(41)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
1a
d2xgpa2
A:390-510
1b
d2xgpb2
B:390-510
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Lesion bypass DNA polymerase (Y-family), catalytic domain
(104)
Protein domain
:
automated matches
(35)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
2a
d2xgpa1
A:0-389
2b
d2xgpb1
B:-1-389
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_IMS_2xgpB01 (B:29-276)
1b: PFAM_IMS_2xgpB02 (B:29-276)
2a: PFAM_IMS_C_2xgpB03 (B:365-500)
2b: PFAM_IMS_C_2xgpB04 (B:365-500)
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Clan
:
no clan defined [family: IMS]
(76)
Family
:
IMS
(76)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
1a
IMS-2xgpB01
B:29-276
1b
IMS-2xgpB02
B:29-276
Clan
:
no clan defined [family: IMS_C]
(74)
Family
:
IMS_C
(74)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
2a
IMS_C-2xgpB03
B:365-500
2b
IMS_C-2xgpB04
B:365-500
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Asymmetric Unit 1
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Asym.Unit (190 KB)
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