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2O6G
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IRF-3 BOUND TO THE INTERFERON-B ENHANCER
Authors
:
D. Panne
Date
:
07 Dec 06 (Deposition) - 24 Jul 07 (Release) - 17 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : C,D,E,F,G,H
Biol. Unit 1: C,D,E,F,G,H (1x)
Keywords
:
Protein-Dna Complex, Transcription-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
D. Panne, T. Maniatis, S. C. Harrison
An Atomic Model Of The Interferon-Beta Enhanceosome.
Cell(Cambridge, Mass. ) V. 129 1111 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011901 (R96Q, chain E/F/G/H, )
2: VAR_049643 (Y107F, chain E/F/G/H, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011901
R
96
Q
IRF3_HUMAN
Polymorphism
968457
E/F/G/H
R
96
Q
2
UniProt
VAR_049643
Y
107
F
IRF3_HUMAN
Polymorphism
34745118
E/F/G/H
Y
107
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: IRF_2 (E:5-111,F:5-111,G:5-111,H:5-111)
2: IRF_1 (E:26-58,F:26-58,G:26-58,H:26-58)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IRF_2
PS51507
IRF tryptophan pentad repeat DNA-binding domain profile.
IRF3_HUMAN
5-111
4
E:5-111
F:5-111
G:5-111
H:5-111
2
IRF_1
PS00601
IRF tryptophan pentad repeat DNA-binding domain signature.
IRF3_HUMAN
26-58
4
E:26-58
F:26-58
G:26-58
H:26-58
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Exons
(2, 8)
Info
All Exons
Exon 1.2 (E:3-55 | F:4-55 | G:3-55 | H:4-55)
Exon 1.3 (E:56-112 | F:56-111 | G:56-112 | H...)
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000377139
1a
ENSE00001741588
chr19:
50169132-50168888
245
IRF3_HUMAN
-
0
0
-
-
1.2
ENST00000377139
2
ENSE00001192374
chr19:
50168103-50167931
173
IRF3_HUMAN
1-55
55
4
E:3-55
F:4-55
G:3-55
H:4-55
53
52
53
52
1.3
ENST00000377139
3
ENSE00000720991
chr19:
50166771-50166600
172
IRF3_HUMAN
56-113
58
4
E:56-112
F:56-111
G:56-112
H:56-111
57
56
57
56
1.4
ENST00000377139
4
ENSE00001762773
chr19:
50166515-50166445
71
IRF3_HUMAN
113-136
24
0
-
-
1.5
ENST00000377139
5
ENSE00001662781
chr19:
50165874-50165682
193
IRF3_HUMAN
137-201
65
0
-
-
1.6
ENST00000377139
6
ENSE00001759095
chr19:
50165585-50165205
381
IRF3_HUMAN
201-328
128
0
-
-
1.7b
ENST00000377139
7b
ENSE00001699705
chr19:
50164085-50163970
116
IRF3_HUMAN
328-366
39
0
-
-
1.8b
ENST00000377139
8b
ENSE00001707173
chr19:
50163090-50162829
262
IRF3_HUMAN
367-427
61
0
-
-
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2o6ge_ (E:)
1b: SCOP_d2o6gf_ (F:)
1c: SCOP_d2o6gg_ (G:)
1d: SCOP_d2o6gh_ (H:)
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(
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)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
Interferon regulatory factor
(8)
Protein domain
:
Interferon regulatory factor 3, IRF-3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2o6ge_
E:
1b
d2o6gf_
F:
1c
d2o6gg_
G:
1d
d2o6gh_
H:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2o6gE01 (E:7-110)
1b: CATH_2o6gF01 (F:7-110)
1c: CATH_2o6gG01 (G:7-110)
1d: CATH_2o6gH01 (H:7-110)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
1a
2o6gE01
E:7-110
1b
2o6gF01
F:7-110
1c
2o6gG01
G:7-110
1d
2o6gH01
H:7-110
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_IRF_2o6gH01 (H:5-111)
1b: PFAM_IRF_2o6gH02 (H:5-111)
1c: PFAM_IRF_2o6gH03 (H:5-111)
1d: PFAM_IRF_2o6gH04 (H:5-111)
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Clan
:
no clan defined [family: IRF]
(4)
Family
:
IRF
(4)
Homo sapiens (Human)
(3)
1a
IRF-2o6gH01
H:5-111
1b
IRF-2o6gH02
H:5-111
1c
IRF-2o6gH03
H:5-111
1d
IRF-2o6gH04
H:5-111
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Asym.Unit (124 KB)
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