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2JQ7
Asym. Unit
Info
Asym.Unit (401 KB)
Biol.Unit 1 (42 KB)
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Models
(10 )
Title
:
MODEL FOR THIOSTREPTON BINDING TO THE RIBOSOMAL L11-RNA
Authors
:
H. R. A. Jonker, S. Ilin, S. K. Grimm, J. Woehnert, H. Schwalbe
Date
:
30 May 07 (Deposition) - 03 Jul 07 (Release) - 27 May 15 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B,C (10 x)
Biol. Unit 1: A,B,C (1x)
Keywords
:
Ribosome-Antibiotic Complex, Thiopeptide, Antibacterial, Thiazole, Thiazoline, Oxazole, Ribosome, L11, Translation Inhibition
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. R. A. Jonker, S. Ilin, S. K. Grimm, J. Woehnert, H. Schwalbe
L11 Domain Rearrangement Upon Binding To Rna And Thiostrepton Studied By Nmr Spectroscopy
Nucleic Acids Res. V. 35 441 2007
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Hetero Components
(8, 13)
Info
All Hetero Components
1a: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9a)
1b: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9b)
1c: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9c)
1d: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9d)
2a: (2Z)-2-AMINOBUT-2-ENOIC ACID (DBUa)
3a: D-CYSTEINE (DCYa)
4a: 2-AMINO-ACRYLIC ACID (DHAa)
4b: 2-AMINO-ACRYLIC ACID (DHAb)
4c: 2-AMINO-ACRYLIC ACID (DHAc)
5a: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6a)
6a: AMINO GROUP (NH2a)
7a: 8-HYDROXY-4-(1-HYDROXYETHYL)QUINOL... (QUAa)
8a: (2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3... (TS9a)
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No.
Name
Count
Type
Full Name
1
BB9
4
Mod. Amino Acid
(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
2
DBU
1
Mod. Amino Acid
(2Z)-2-AMINOBUT-2-ENOIC ACID
3
DCY
1
Mod. Amino Acid
D-CYSTEINE
4
DHA
3
Mod. Amino Acid
2-AMINO-ACRYLIC ACID
5
MH6
1
Mod. Amino Acid
3-HYDROXY-2-IMINOPROPANOIC ACID
6
NH2
1
Mod. Amino Acid
AMINO GROUP
7
QUA
1
Mod. Amino Acid
8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID
8
TS9
1
Mod. Amino Acid
(2S,3S,4R)-2-AMINO-3,4-DIHYDROXY-3-METHYLPENTANOIC ACID
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:22 , PRO A:26 , MET A:36 , A B:1067 , G B:1068 , U B:1094 , A B:1095
BINDING SITE FOR CHAIN C OF THIOSTREPTON
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L11 (A:126-141)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L11
PS00359
Ribosomal protein L11 signature.
RL11_THEMA
126-141
1
A:126-141
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Exons
(0, 0)
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SCOP Domains
(1, 1)
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1a: SCOP_d2jq7a1 (A:8-140)
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Class
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Low resolution protein structures
(283)
Fold
:
Ribosome and ribosomal fragments
(154)
Superfamily
:
Ribosome and ribosomal fragments
(154)
Family
:
Ribosome complexes
(103)
Protein domain
:
70S ribosome functional complex
(103)
Thermotoga maritima [TaxId: 2336]
(2)
1a
d2jq7a1
A:8-140
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CATH Domains
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Pfam Domains
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