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2JE6
Biol. Unit 1
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Asym.Unit (127 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME
Authors
:
E. Lorentzen, E. Conti
Date
:
15 Jan 07 (Deposition) - 23 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,I
Biol. Unit 1: A,B,I (3x)
Keywords
:
Nuclease, Hydrolase, Rna-Binding, Exonuclease, Phosphorolytic, Exoribonuclease, Rna Degradation, Rna, Rrp4, Rrp42, Rrp41, Exosome, Archaeal, Rnase Ph
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Lorentzen, A. Dziembowski, D. Lindner, B. Seraphin, E. Conti
Rna Channelling By The Archaeal Exosome.
Embo Rep. V. 8 470 2007
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CHLORIDE ION (CLa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
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Label:
No.
Name
Count
Type
Full Name
1
1PE
3
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:138 , ARG B:139 , HOH B:2090
BINDING SITE FOR RESIDUE CL B1242
2
AC2
SOFTWARE
SER A:41 , THR A:43 , LEU A:55 , LYS A:57
BINDING SITE FOR RESIDUE 1PE A1276
3
AC3
SOFTWARE
PRO A:39 , SER A:41 , LYS A:57 , HOH A:2211
BINDING SITE FOR RESIDUE PEG A1277
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: S1 (I:73-144)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
S1
PS50126
S1 domain profile.
RRP4_SULSO
73-144
3
I:73-144
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(7, 7)
Info
All SCOP Domains
1a: SCOP_d2je6i2 (I:7-65)
2a: SCOP_d2je6i1 (I:66-152)
3a: SCOP_d2je6i3 (I:153-221)
4a: SCOP_d2je6b2 (B:156-241)
5a: SCOP_d2je6a2 (A:192-275)
6a: SCOP_d2je6b1 (B:8-155)
7a: SCOP_d2je6a1 (A:1-191)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Ribosomal L27 protein-like
(52)
Family
:
ECR1 N-terminal domain-like
(8)
Protein domain
:
Exosome complex RNA-binding protein 1, ECR1
(5)
Sulfolobus solfataricus [TaxId: 2287]
(4)
1a
d2je6i2
I:7-65
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Cold shock DNA-binding domain-like
(310)
Protein domain
:
S1-domain of exosome complex RNA-binding protein 1, ECR1
(6)
Sulfolobus solfataricus [TaxId: 2287]
(4)
2a
d2je6i1
I:66-152
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Superfamily
:
Eukaryotic type KH-domain (KH-domain type I)
(51)
Family
:
Eukaryotic type KH-domain (KH-domain type I)
(40)
Protein domain
:
Exosome complex RNA-binding protein 1, ECR1
(6)
Sulfolobus solfataricus [TaxId: 2287]
(4)
3a
d2je6i3
I:153-221
Fold
:
Ribonuclease PH domain 2-like
(52)
Superfamily
:
Ribonuclease PH domain 2-like
(52)
Family
:
Ribonuclease PH domain 2-like
(41)
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
4a
d2je6b2
B:156-241
Protein domain
:
Exosome complex exonuclease 2, ECX2
(10)
Sulfolobus solfataricus [TaxId: 2287]
(6)
5a
d2je6a2
A:192-275
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Ribonuclease PH domain 1-like
(45)
Protein domain
:
Exosome complex exonuclease 1, ECX1
(11)
Sulfolobus solfataricus [TaxId: 2287]
(9)
6a
d2je6b1
B:8-155
Protein domain
:
Exosome complex exonuclease 2,ECX2
(10)
Sulfolobus solfataricus [TaxId: 2287]
(6)
7a
d2je6a1
A:1-191
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asym.Unit (127 KB)
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