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2GM4
Asym. Unit
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Asym.Unit (92 KB)
Biol.Unit 1 (167 KB)
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(1)
Title
:
AN ACTIVATED, TETRAMERIC GAMMA-DELTA RESOLVASE: HIN CHIMAERA BOUND TO CLEAVED DNA
Authors
:
S. Kamtekar, R. S. Ho, W. Li, T. A. Steitz
Date
:
05 Apr 06 (Deposition) - 27 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,I,J,K,X,Y,Z
Biol. Unit 1: A,B,I,J,K,X,Y,Z (2x)
Keywords
:
Gamma Delta Resolvase, Protein Dna Complex, Site Specific Recombination, Recombination, Dna
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Kamtekar, R. S. Ho, M. J. Cocco, W. Li, S. V. Wenwieser, M. R. Boocock, N. D. Grindley, T. A. Steitz
Implications Of Structures Of Synaptic Tetramers Of Gamma Delta Resolvase For The Mechanism Of Recombination.
Proc. Natl. Acad. Sci. Usa V. 103 10642 2006
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(3, 6)
Info
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1: RECOMBINASES_3 (A:3-137,B:3-137)
2: RECOMBINASES_1 (A:6-14,B:6-14)
3: RECOMBINASES_2 (A:58-70,B:58-70)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECOMBINASES_3
PS51736
Resolvase/invertase-type recombinase catalytic domain profile.
TNR1_ECOLI
2-137
2
A:3-137
B:3-137
2
RECOMBINASES_1
PS00397
Site-specific recombinases active site.
TNR1_ECOLI
6-14
2
A:6-14
B:6-14
3
RECOMBINASES_2
PS00398
Site-specific recombinases signature 2.
TNR1_ECOLI
58-70
2
A:58-70
B:58-70
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Exons
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2gm4a1 (A:141-183)
1b: SCOP_d2gm4b1 (B:141-183)
2a: SCOP_d2gm4a2 (A:1-140)
2b: SCOP_d2gm4b2 (B:2-140)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Recombinase DNA-binding domain
(20)
Protein domain
:
gamma,delta resolvase (C-terminal domain)
(6)
Escherichia coli [TaxId: 562]
(6)
1a
d2gm4a1
A:141-183
1b
d2gm4b1
B:141-183
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Resolvase-like
(37)
Superfamily
:
Resolvase-like
(11)
Family
:
gamma,delta resolvase, catalytic domain
(9)
Protein domain
:
gamma,delta resolvase, catalytic domain
(9)
Escherichia coli [TaxId: 562]
(9)
2a
d2gm4a2
A:1-140
2b
d2gm4b2
B:2-140
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_2gm4A01 (A:1-98)
1b: CATH_2gm4B01 (B:2-98)
2a: CATH_2gm4A03 (A:138-183)
2b: CATH_2gm4B03 (B:138-183)
3a: CATH_2gm4A02 (A:99-137)
3b: CATH_2gm4B02 (B:99-137)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1390, no name defined]
(8)
[unclassified]
(4)
1a
2gm4A01
A:1-98
1b
2gm4B01
B:2-98
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
[unclassified]
(65)
2a
2gm4A03
A:138-183
2b
2gm4B03
B:138-183
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.40, no name defined]
(4)
[unclassified]
(4)
3a
2gm4A02
A:99-137
3b
2gm4B02
B:99-137
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (92 KB)
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