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2GBY
Biol. Unit 2
Info
Asym.Unit (133 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (503 KB)
Biol.Unit 4 (503 KB)
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(1)
Title
:
STRUCTURE OF QACR MULTIDRUG TRANSCRIPTIONAL REGULATOR BOUND TO BIVALENT DIAMIDINE BERENIL
Authors
:
J. T. Schuman
Date
:
12 Mar 06 (Deposition) - 08 Apr 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: A,B,D,E (4x)
Biol. Unit 4: A,B,D,E (4x)
Keywords
:
Diamidine, Helix-Turn-Helix, Multridrug Binding, Transcription
(Keyword Search:
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Reference
:
R. G. Brennan, J. T. Schuman
Structure Of Qacr Multidrug Transcriptional Regulator Bound To Trivalent And Bivalent Diamidine Drugs
To Be Published
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: BERENIL (BRNa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BRN
-1
Ligand/Ion
BERENIL
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
LYS A:4 , TYR A:41 , HIS A:42 , LYS E:17
BINDING SITE FOR RESIDUE SO4 A 299
2
AC4
SOFTWARE
LYS E:36 , TYR E:40 , THR E:45 , LYS E:46
BINDING SITE FOR RESIDUE SO4 E 249
3
AC5
SOFTWARE
SER A:35 , LYS A:36 , LYS E:60
BINDING SITE FOR RESIDUE SO4 A 699
4
AC6
SOFTWARE
TYR D:20 , LYS D:46 , GLU D:105 , TYR D:106
BINDING SITE FOR RESIDUE SO4 D 999
5
AC7
SOFTWARE
LEU E:8 , LYS E:12 , ILE E:53 , ILE E:56 , GLU E:57
BINDING SITE FOR RESIDUE SO4 E 399
6
AC8
SOFTWARE
LYS A:36 , TYR A:40 , ASN E:2 , ASP E:5 , LYS E:6
BINDING SITE FOR RESIDUE SO4 E 799
7
BC3
SOFTWARE
GLU D:13 , LYS D:30 , GLU D:33
BINDING SITE FOR RESIDUE SO4 D 779
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (D:19-49,E:19-49)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
2
-
-
D:19-49
E:19-49
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2gbya1 (A:2-72)
1b: SCOP_d2gbyb1 (B:2-72)
1c: SCOP_d2gbyd1 (D:2-72)
1d: SCOP_d2gbye1 (E:2-72)
2a: SCOP_d2gbya2 (A:73-187)
2b: SCOP_d2gbyb2 (B:73-187)
2c: SCOP_d2gbyd2 (D:73-187)
2d: SCOP_d2gbye2 (E:73-187)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d2gbya1
A:2-72
1b
d2gbyb1
B:2-72
1c
d2gbyd1
D:2-72
1d
d2gbye1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d2gbya2
A:73-187
2b
d2gbyb2
B:73-187
2c
d2gbyd2
D:73-187
2d
d2gbye2
E:73-187
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2gbyA01 (A:2-50)
1b: CATH_2gbyB01 (B:2-50)
1c: CATH_2gbyD01 (D:2-50)
1d: CATH_2gbyE01 (E:2-50)
2a: CATH_2gbyA02 (A:51-187)
2b: CATH_2gbyB02 (B:51-187)
2c: CATH_2gbyD02 (D:51-187)
2d: CATH_2gbyE02 (E:51-187)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280.
(8)
1a
2gbyA01
A:2-50
1b
2gbyB01
B:2-50
1c
2gbyD01
D:2-50
1d
2gbyE01
E:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280.
(7)
2a
2gbyA02
A:51-187
2b
2gbyB02
B:51-187
2c
2gbyD02
D:51-187
2d
2gbyE02
E:51-187
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Pfam Domains
(0, 0)
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Chain D
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (503 KB)
Header - Biol.Unit 3
Biol.Unit 4 (503 KB)
Header - Biol.Unit 4
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