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Asym. Unit
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Asym.Unit (648 KB)
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Models
(20 )
Title
:
THE SOLUTION STRUCTURE OF THE SWIRM DOMAIN OF HUMAN LSD1
Authors
:
N. Tochio, T. Umehara, S. Koshiba, M. Inoue, A. Tanaka, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
18 May 05 (Deposition) - 18 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Swirm Domain, Lsd1, Aof2, Kiaa0601, Histone Modulation, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
N. Tochio, T. Umehara, S. Koshiba, M. Inoue, T. Yabuki, M. Aoki, E. Seki, S. Watanabe, Y. Tomo, M. Hanada, M. Ikari, M. Sato, T. Terada, T. Nagase, O. Ohara, M. Shirouzu, A. Tanaka, T. Kigawa, S. Yokoyama
Solution Structure Of The Swirm Domain Of Human Histone Demethylase Lsd1
Structure V. 14 457 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SWIRM (A:13-112)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SWIRM
PS50934
SWIRM domain profile.
KDM1A_HUMAN
174-273
1
A:13-112
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Exons
(7, 7)
Info
All Exons
Exon 1.1a (A:1-4)
Exon 1.2 (A:5-12)
Exon 1.4a (A:12-56)
Exon 1.5 (A:57-83)
Exon 1.6a (A:83-114)
Exon 1.7 (A:114-122 (gaps))
Exon 1.8 (A:123-124)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.4a
4: Boundary 1.4a/1.5
5: Boundary 1.5/1.6a
6: Boundary 1.6a/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000356634
1a
ENSE00001422377
chr1:
23345941-23346440
500
KDM1A_HUMAN
1-117
117
1
A:1-4
4
1.2
ENST00000356634
2
ENSE00000388542
chr1:
23356962-23357127
166
KDM1A_HUMAN
118-173
56
1
A:5-12
8
1.4a
ENST00000356634
4a
ENSE00000759117
chr1:
23376880-23377013
134
KDM1A_HUMAN
173-217
45
1
A:12-56
45
1.5
ENST00000356634
5
ENSE00000859702
chr1:
23380254-23380332
79
KDM1A_HUMAN
218-244
27
1
A:57-83
27
1.6a
ENST00000356634
6a
ENSE00000859703
chr1:
23381562-23381654
93
KDM1A_HUMAN
244-275
32
1
A:83-114
32
1.7
ENST00000356634
7
ENSE00000859704
chr1:
23382425-23382531
107
KDM1A_HUMAN
275-310
36
1
A:114-122 (gaps)
15
1.8
ENST00000356634
8
ENSE00000859705
chr1:
23383977-23384058
82
KDM1A_HUMAN
311-338
28
1
A:123-124
2
1.9
ENST00000356634
9
ENSE00000759111
chr1:
23385566-23385660
95
KDM1A_HUMAN
338-369
32
0
-
-
1.11
ENST00000356634
11
ENSE00000759110
chr1:
23395032-23395174
143
KDM1A_HUMAN
370-417
48
0
-
-
1.12
ENST00000356634
12
ENSE00000759108
chr1:
23395554-23395644
91
KDM1A_HUMAN
417-447
31
0
-
-
1.13
ENST00000356634
13
ENSE00000859709
chr1:
23397718-23397852
135
KDM1A_HUMAN
448-492
45
0
-
-
1.14
ENST00000356634
14
ENSE00000759106
chr1:
23398617-23398690
74
KDM1A_HUMAN
493-517
25
0
-
-
1.15b
ENST00000356634
15b
ENSE00000388553
chr1:
23399785-23399896
112
KDM1A_HUMAN
517-554
38
0
-
-
1.16a
ENST00000356634
16a
ENSE00000759050
chr1:
23403721-23403853
133
KDM1A_HUMAN
555-599
45
0
-
-
1.17b
ENST00000356634
17b
ENSE00000859713
chr1:
23405483-23405670
188
KDM1A_HUMAN
599-661
63
0
-
-
1.18b
ENST00000356634
18b
ENSE00000859714
chr1:
23406046-23406160
115
KDM1A_HUMAN
662-700
39
0
-
-
1.19
ENST00000356634
19
ENSE00000859715
chr1:
23407939-23408066
128
KDM1A_HUMAN
700-742
43
0
-
-
1.20
ENST00000356634
20
ENSE00000759046
chr1:
23408713-23408859
147
KDM1A_HUMAN
743-791
49
0
-
-
1.21c
ENST00000356634
21c
ENSE00001564450
chr1:
23409672-23410182
511
KDM1A_HUMAN
792-852
61
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2coma1 (A:8-118)
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All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
SWIRM domain
(14)
Protein domain
:
Lysine-specific histone demethylase 1, LSD1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2coma1
A:8-118
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Chain A
Asymmetric Unit 1
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