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2AS5
Biol. Unit 2
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Asym.Unit (166 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT AND FOXP2 BOUND SPECIFICALLY TO DNA.
Authors
:
Y. Wu, J. C. Stroud, M. Borde, D. L. Bates, L. Guo, A. Han, A. Rao, L. Chen
Date
:
22 Aug 05 (Deposition) - 08 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,F,G,M,N
Biol. Unit 1: A,B,F,N (1x)
Biol. Unit 2: C,D,G,M (1x)
Keywords
:
Forkhead Domain, Rhr Domain, Rel Homology Region, Ig Fold, Winged Helix-Turn-Helix, B-Dna, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wu, M. Borde, V. Heissmeyer, M. Feuerer, A. D. Lapan, J. C. Stroud, D. L. Bates, L. Guo, A. Han, S. F. Ziegler, D. Mathis, C. Benoist, L. Chen, A. Rao
Foxp3 Controls Regulatory T Cell Function Through Cooperation With Nfat.
Cell(Cambridge, Mass. ) V. 126 375 2006
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LEU G:556 , SER G:557 , HIS G:559 , PHE G:562
BINDING SITE FOR RESIDUE MG G 202
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051783 (H446R, chain M, )
2: VAR_012278 (R553H, chain G, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051783
H
446
R
NFAC2_HUMAN
Polymorphism
12479626
M
H
446
R
2
UniProt
VAR_012278
R
553
H
FOXP2_HUMAN
Disease (SPCH1)
---
G
R
553
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: REL_2 (M:392-574)
2: FORK_HEAD_3 (G:504-577)
3: FORK_HEAD_2 (G:548-554)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_2
PS50254
NF-kappa-B/Rel/dorsal domain profile.
NFAC2_HUMAN
392-574
1
M:392-574
-
2
FORK_HEAD_3
PS50039
Fork head domain profile.
FOXP2_HUMAN
504-577
1
-
G:504-577
3
FORK_HEAD_2
PS00658
Fork head domain signature 2.
FOXP2_HUMAN
548-554
1
-
G:548-554
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2as5f_ (F:)
1b: SCOP_d2as5g_ (G:)
2a: SCOP_d2as5m2 (M:396-575)
2b: SCOP_d2as5n2 (N:396-575)
3a: SCOP_d2as5m1 (M:576-678)
3b: SCOP_d2as5n1 (N:576-678)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2as5f_
F:
1b
d2as5g_
G:
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC), DNA-binding domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d2as5m2
M:396-575
2b
d2as5n2
N:396-575
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC2)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
3a
d2as5m1
M:576-678
3b
d2as5n1
N:576-678
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2as5M01 (M:397-569)
1b: CATH_2as5N01 (N:397-569)
2a: CATH_2as5M02 (M:570-678)
2b: CATH_2as5N02 (N:570-678)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
2as5M01
M:397-569
1b
2as5N01
N:397-569
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
2as5M02
M:570-678
2b
2as5N02
N:570-678
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (166 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
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