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2AS5
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT AND FOXP2 BOUND SPECIFICALLY TO DNA.
Authors
:
Y. Wu, J. C. Stroud, M. Borde, D. L. Bates, L. Guo, A. Han, A. Rao, L. Chen
Date
:
22 Aug 05 (Deposition) - 08 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,F,G,M,N
Biol. Unit 1: A,B,F,N (1x)
Biol. Unit 2: C,D,G,M (1x)
Keywords
:
Forkhead Domain, Rhr Domain, Rel Homology Region, Ig Fold, Winged Helix-Turn-Helix, B-Dna, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wu, M. Borde, V. Heissmeyer, M. Feuerer, A. D. Lapan, J. C. Stroud, D. L. Bates, L. Guo, A. Han, S. F. Ziegler, D. Mathis, C. Benoist, L. Chen, A. Rao
Foxp3 Controls Regulatory T Cell Function Through Cooperation With Nfat.
Cell(Cambridge, Mass. ) V. 126 375 2006
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU F:556 , SER F:557 , HIS F:559 , PHE F:562
BINDING SITE FOR RESIDUE MG F 201
2
AC2
SOFTWARE
LEU G:556 , SER G:557 , HIS G:559 , PHE G:562
BINDING SITE FOR RESIDUE MG G 202
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051783 (H446R, chain M/N, )
2: VAR_012278 (R553H, chain F/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051783
H
446
R
NFAC2_HUMAN
Polymorphism
12479626
M/N
H
446
R
2
UniProt
VAR_012278
R
553
H
FOXP2_HUMAN
Disease (SPCH1)
---
F/G
R
553
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: REL_2 (M:392-574,N:392-574)
2: FORK_HEAD_3 (F:504-577,G:504-577)
3: FORK_HEAD_2 (F:548-554,G:548-554)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_2
PS50254
NF-kappa-B/Rel/dorsal domain profile.
NFAC2_HUMAN
392-574
2
M:392-574
N:392-574
2
FORK_HEAD_3
PS50039
Fork head domain profile.
FOXP2_HUMAN
504-577
2
F:504-577
G:504-577
3
FORK_HEAD_2
PS00658
Fork head domain signature 2.
FOXP2_HUMAN
548-554
2
F:548-554
G:548-554
[
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]
Exons
(10, 20)
Info
All Exons
Exon 1.25 (F:502-515 | G:502-515)
Exon 1.26 (F:516-549 | G:516-549)
Exon 1.27 (F:550-584 | G:550-584)
Exon 2.4 (M:392-444 | N:392-444)
Exon 2.5 (M:445-512 | N:445-512)
Exon 2.6 (M:512-570 | N:512-570)
Exon 2.7 (M:570-617 | N:570-617)
Exon 2.8 (M:617-635 | N:617-635)
Exon 2.9 (M:636-678 | N:636-678)
Exon 2.10 (M:678-678 | N:678-678)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.24/1.25
02: Boundary 1.25/1.26
03: Boundary 1.26/1.27
04: Boundary 1.27/1.28
05: Boundary 2.3/2.4
06: Boundary 2.4/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7
09: Boundary 2.7/2.8
10: Boundary 2.8/2.9
11: Boundary 2.9/2.10
12: Boundary 2.10/2.12c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7
ENST00000393494
7
ENSE00001558209
chr7:
114054329-114054597
269
FOXP2_HUMAN
-
0
0
-
-
1.9c
ENST00000393494
9c
ENSE00002190822
chr7:
114066557-114066734
178
FOXP2_HUMAN
1-56
56
0
-
-
1.12
ENST00000393494
12
ENSE00001772837
chr7:
114174672-114174761
90
FOXP2_HUMAN
57-86
30
0
-
-
1.15a
ENST00000393494
15a
ENSE00001601293
chr7:
114268595-114268732
138
FOXP2_HUMAN
87-132
46
0
-
-
1.17b
ENST00000393494
17b
ENSE00001723496
chr7:
114269860-114270060
201
FOXP2_HUMAN
133-199
67
0
-
-
1.18d
ENST00000393494
18d
ENSE00001596482
chr7:
114271583-114271760
178
FOXP2_HUMAN
200-259
60
0
-
-
1.19b
ENST00000393494
19b
ENSE00001636514
chr7:
114282465-114282678
214
FOXP2_HUMAN
259-330
72
0
-
-
1.20a
ENST00000393494
20a
ENSE00001695866
chr7:
114284740-114284844
105
FOXP2_HUMAN
330-365
36
0
-
-
1.21
ENST00000393494
21
ENSE00001798613
chr7:
114292258-114292345
88
FOXP2_HUMAN
365-394
30
0
-
-
1.22a
ENST00000393494
22a
ENSE00001643159
chr7:
114293981-114294064
84
FOXP2_HUMAN
395-422
28
0
-
-
1.24
ENST00000393494
24
ENSE00001726579
chr7:
114298121-114298322
202
FOXP2_HUMAN
423-490
68
0
-
-
1.25
ENST00000393494
25
ENSE00001610854
chr7:
114299411-114299487
77
FOXP2_HUMAN
490-515
26
2
F:502-515
G:502-515
14
14
1.26
ENST00000393494
26
ENSE00001721811
chr7:
114299627-114299728
102
FOXP2_HUMAN
516-549
34
2
F:516-549
G:516-549
34
34
1.27
ENST00000393494
27
ENSE00001699074
chr7:
114302120-114302241
122
FOXP2_HUMAN
550-590
41
2
F:550-584
G:550-584
35
35
1.28
ENST00000393494
28
ENSE00001726203
chr7:
114303505-114303574
70
FOXP2_HUMAN
590-613
24
0
-
-
1.29a
ENST00000393494
29a
ENSE00001774863
chr7:
114304328-114304491
164
FOXP2_HUMAN
614-668
55
0
-
-
1.30d
ENST00000393494
30d
ENSE00001515519
chr7:
114329837-114330218
382
FOXP2_HUMAN
668-715
48
0
-
-
2.2
ENST00000396009
2
ENSE00001455518
chr20:
50159258-50158909
350
NFAC2_HUMAN
1-44
44
0
-
-
2.3
ENST00000396009
3
ENSE00000662713
chr20:
50140649-50139620
1030
NFAC2_HUMAN
44-387
344
0
-
-
2.4
ENST00000396009
4
ENSE00000662712
chr20:
50133494-50133323
172
NFAC2_HUMAN
387-444
58
2
M:392-444
N:392-444
53
53
2.5
ENST00000396009
5
ENSE00000662711
chr20:
50092197-50091995
203
NFAC2_HUMAN
445-512
68
2
M:445-512
N:445-512
68
68
2.6
ENST00000396009
6
ENSE00000662710
chr20:
50090689-50090517
173
NFAC2_HUMAN
512-570
59
2
M:512-570
N:512-570
59
59
2.7
ENST00000396009
7
ENSE00000662709
chr20:
50071225-50071085
141
NFAC2_HUMAN
570-617
48
2
M:570-617
N:570-617
48
48
2.8
ENST00000396009
8
ENSE00000662708
chr20:
50052298-50052243
56
NFAC2_HUMAN
617-635
19
2
M:617-635
N:617-635
19
19
2.9
ENST00000396009
9
ENSE00000662707
chr20:
50051851-50051725
127
NFAC2_HUMAN
636-678
43
2
M:636-678
N:636-678
43
43
2.10
ENST00000396009
10
ENSE00001455516
chr20:
50049293-50048604
690
NFAC2_HUMAN
678-908
231
2
M:678-678
N:678-678
1
1
2.12c
ENST00000396009
12c
ENSE00001955202
chr20:
50007988-50003494
4495
NFAC2_HUMAN
908-925
18
0
-
-
[
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]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2as5f_ (F:)
1b: SCOP_d2as5g_ (G:)
2a: SCOP_d2as5m2 (M:396-575)
2b: SCOP_d2as5n2 (N:396-575)
3a: SCOP_d2as5m1 (M:576-678)
3b: SCOP_d2as5n1 (N:576-678)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2as5f_
F:
1b
d2as5g_
G:
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC), DNA-binding domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d2as5m2
M:396-575
2b
d2as5n2
N:396-575
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC2)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
3a
d2as5m1
M:576-678
3b
d2as5n1
N:576-678
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2as5M01 (M:397-569)
1b: CATH_2as5N01 (N:397-569)
2a: CATH_2as5M02 (M:570-678)
2b: CATH_2as5N02 (N:570-678)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
2as5M01
M:397-569
1b
2as5N01
N:397-569
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
2as5M02
M:570-678
2b
2as5N02
N:570-678
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Nucleic
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Hetero
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Solvent
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Protein & NOT PROSITE
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Chain C
Chain D
Chain F
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Chain N
Asymmetric Unit 1
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Asym.Unit (166 KB)
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