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1YTY
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (37 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOANTIGEN
Authors
:
M. Teplova, Y. R. Yuan, S. Ilin, L. Malinina, A. T. Phan, A. Teplov, D. J. P
Date
:
11 Feb 05 (Deposition) - 17 Jan 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein-Rna Complex, Transcription-Rna Complex
(Keyword Search:
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)
Reference
:
M. Teplova, Y. R. Yuan, A. T. Phan, L. Malinina, S. Ilin, A. Teplov, D. J. Patel
Structural Basis For Recognition And Sequestration Of Uuu(Oh) 3' Temini Of Nascent Rna Polymerase Iii Transcripts By La, A Rheumatic Disease Autoantigen.
Mol. Cell V. 21 75 2006
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_034066 (P48S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034066
P
48
S
LA_HUMAN
Polymorphism
17160793
A/B
P
48
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_LA (A:7-99,B:7-99)
2: RRM (A:111-187,B:111-187)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_LA
PS50961
La-type HTH domain profile.
LA_HUMAN
7-99
2
A:7-99
B:7-99
2
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
LA_HUMAN
111-187
2
A:111-187
B:111-187
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Exons
(6, 12)
Info
All Exons
Exon 1.4 (A:6-22 | B:7-22)
Exon 1.5 (A:23-57 | B:23-57)
Exon 1.6a (A:57-115 | B:57-115)
Exon 1.7c (A:116-151 | B:116-151)
Exon 1.7g (A:152-185 | B:152-185)
Exon 1.8c (A:185-189 | B:185-189)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6a
4: Boundary 1.6a/1.7c
5: Boundary 1.7c/1.7g
6: Boundary 1.7g/1.8c
7: Boundary 1.8c/1.8e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000260956
2a
ENSE00001893329
chr2:
170655322-170655486
165
LA_HUMAN
-
0
0
-
-
1.4
ENST00000260956
4
ENSE00002156069
chr2:
170657462-170657536
75
LA_HUMAN
1-22
22
2
A:6-22
B:7-22
17
16
1.5
ENST00000260956
5
ENSE00001610086
chr2:
170661984-170662087
104
LA_HUMAN
23-57
35
2
A:23-57
B:23-57
35
35
1.6a
ENST00000260956
6a
ENSE00000782038
chr2:
170662175-170662349
175
LA_HUMAN
57-115
59
2
A:57-115
B:57-115
59
59
1.7c
ENST00000260956
7c
ENSE00000782039
chr2:
170663295-170663402
108
LA_HUMAN
116-151
36
2
A:116-151
B:116-151
36
36
1.7g
ENST00000260956
7g
ENSE00002168098
chr2:
170663481-170663581
101
LA_HUMAN
152-185
34
2
A:152-185
B:152-185
34
34
1.8c
ENST00000260956
8c
ENSE00000782041
chr2:
170664992-170665063
72
LA_HUMAN
185-209
25
2
A:185-189
B:185-189
5
5
1.8e
ENST00000260956
8e
ENSE00000782042
chr2:
170665370-170665412
43
LA_HUMAN
209-223
15
0
-
-
1.9c
ENST00000260956
9c
ENSE00000782043
chr2:
170666793-170666933
141
LA_HUMAN
224-270
47
0
-
-
1.10b
ENST00000260956
10b
ENSE00000782044
chr2:
170667368-170667554
187
LA_HUMAN
271-333
63
0
-
-
1.11
ENST00000260956
11
ENSE00000782045
chr2:
170667693-170667833
141
LA_HUMAN
333-380
48
0
-
-
1.12b
ENST00000260956
12b
ENSE00001588653
chr2:
170668178-170668574
397
LA_HUMAN
380-408
29
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1ytya1 (A:6-103)
1b: SCOP_d1ytyb1 (B:7-103)
2a: SCOP_d1ytya2 (A:104-189)
2b: SCOP_d1ytyb2 (B:104-189)
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Protein Domains
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(
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Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
La domain
(9)
Protein domain
:
Lupus La autoantigen N-terminal domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1ytya1
A:6-103
1b
d1ytyb1
B:7-103
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Lupus LA protein
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
2a
d1ytya2
A:104-189
2b
d1ytyb2
B:104-189
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1ytyA02 (A:100-189)
1b: CATH_1ytyB02 (B:100-189)
2a: CATH_1ytyA01 (A:6-90)
2b: CATH_1ytyB01 (B:7-90)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
[unclassified]
(45)
1a
1ytyA02
A:100-189
1b
1ytyB02
B:100-189
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
2a
1ytyA01
A:6-90
2b
1ytyB01
B:7-90
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT PROSITE
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Chain C
Chain D
Asymmetric Unit 1
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