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Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FOLLICLE STIMULATING HORMONE COMPLEXED WITH ITS RECEPTOR
Authors
:
Q. R. Fan, W. A. Hendrickson
Date
:
30 Oct 04 (Deposition) - 25 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.92
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Hormone-Receptor Complex, Leucine-Rich Repeats, Cysteine-Knot Motif, Hormone-Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. R. Fan, W. A. Hendrickson
Structure Of Human Follicle-Stimulating Hormone In Complex With Its Receptor.
Nature V. 433 269 2005
[
close entry info
]
Hetero Components
(3, 14)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:52 , TYR B:58
BINDING SITE FOR RESIDUE NAG A 93
02
AC2
SOFTWARE
PRO A:24 , ILE A:25 , ASN A:78 , THR A:80
BINDING SITE FOR RESIDUE NAG A 94
03
AC3
SOFTWARE
ASN B:7
BINDING SITE FOR RESIDUE NAG B 112
04
AC4
SOFTWARE
ASN B:24
BINDING SITE FOR RESIDUE NAG B 113
05
AC5
SOFTWARE
ASN C:163 , CYS C:188 , ASN C:191 , GLY C:192 , NAG C:270
BINDING SITE FOR RESIDUE NAG C 269
06
AC6
SOFTWARE
NAG C:269
BINDING SITE FOR RESIDUE NAG C 270
07
AC7
SOFTWARE
PRO D:24 , ILE D:25 , LEU D:26 , ASN D:78
BINDING SITE FOR RESIDUE NAG D 93
08
AC8
SOFTWARE
ASN E:7
BINDING SITE FOR RESIDUE NAG E 112
09
AC9
SOFTWARE
ASN F:163 , ASN F:191 , NAG F:270
BINDING SITE FOR RESIDUE NAG F 269
10
BC1
SOFTWARE
NAG F:269 , BMA F:271
BINDING SITE FOR RESIDUE NAG F 270
11
BC2
SOFTWARE
SER B:22 , NAG F:270
BINDING SITE FOR RESIDUE BMA F 271
12
BC3
SOFTWARE
ARG B:97 , ARG C:52 , CYS F:18 , SER F:26 , ASN F:27 , HOH F:292
BINDING SITE FOR RESIDUE SO4 C 401
13
BC4
SOFTWARE
ARG A:35 , GLY B:100 , PRO B:101 , SER B:102
BINDING SITE FOR RESIDUE SO4 B 402
14
BC5
SOFTWARE
GLN A:27 , ARG B:35 , LEU B:37 , ARG B:44 , SER C:232
BINDING SITE FOR RESIDUE SO4 B 403
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033015 (C51G, chain B/E, )
2: VAR_039279 (S128Y, chain C/F, )
3: VAR_018045 (I160T, chain C/F, )
4: VAR_018046 (A189V, chain C/F, )
5: VAR_039280 (D224V, chain C/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033015
C
69
G
FSHB_HUMAN
Disease (HH24)
5030776
B/E
C
51
G
2
UniProt
VAR_039279
S
128
Y
FSHR_HUMAN
Disease (OHSS)
---
C/F
S
128
Y
3
UniProt
VAR_018045
I
160
T
FSHR_HUMAN
Disease (ODG1)
---
C/F
I
160
T
4
UniProt
VAR_018046
A
189
V
FSHR_HUMAN
Disease (ODG1)
---
C/F
A
189
V
5
UniProt
VAR_039280
D
224
V
FSHR_HUMAN
Disease (ODG1)
---
C/F
D
224
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 10)
Info
All PROSITE Patterns/Profiles
1: GLYCO_HORMONE_ALPHA_3 (A:7-92,D:7-92)
2: GLYCO_HORMONE_BETA_1 (B:28-34,E:28-34)
3: GLYCO_HORMONE_ALPHA_1 (A:28-40,D:28-40)
4: GLYCO_HORMONE_BETA_2 (B:77-104,E:77-104)
5: GLYCO_HORMONE_ALPHA_2 (A:78-91,D:78-91)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCO_HORMONE_ALPHA_3
PS50277
Glycoprotein hormones alpha chain family profile.
GLHA_HUMAN
31-116
2
A:7-92
D:7-92
2
GLYCO_HORMONE_BETA_1
PS00261
Glycoprotein hormones beta chain signature 1.
FSHB_HUMAN
46-52
2
B:28-34
E:28-34
3
GLYCO_HORMONE_ALPHA_1
PS00779
Glycoprotein hormones alpha chain signature 1.
GLHA_HUMAN
52-64
2
A:28-40
D:28-40
4
GLYCO_HORMONE_BETA_2
PS00689
Glycoprotein hormones beta chain signature 2.
FSHB_HUMAN
95-122
2
B:77-104
E:77-104
5
GLYCO_HORMONE_ALPHA_2
PS00780
Glycoprotein hormones alpha chain signature 2.
GLHA_HUMAN
102-115
2
A:78-91
D:78-91
[
close PROSITE info
]
Exons
(5, 10)
Info
All Exons
Exon 1.2b (B:3-35 | E:3-35)
Exon 1.3b (B:36-107 | E:36-107)
Exon 2.2 (A:3-6 | D:6-6)
Exon 2.3 (A:6-67 | D:6-67)
Exon 2.4 (A:68-92 | D:68-92)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1b/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/-
4: Boundary 2.1/2.2
5: Boundary 2.2/2.3
6: Boundary 2.3/2.4
7: Boundary 2.4/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000254122
1b
ENSE00001480046
chr11:
30252563-30252625
63
FSHB_HUMAN
-
0
0
-
-
1.2b
ENST00000254122
2b
ENSE00000900920
chr11:
30253444-30253608
165
FSHB_HUMAN
1-53
53
2
B:3-35
E:3-35
33
33
1.3b
ENST00000254122
3b
ENSE00002189614
chr11:
30255117-30256586
1470
FSHB_HUMAN
54-129
76
2
B:36-107
E:36-107
72
72
2.1
ENST00000369582
1
ENSE00001450387
chr6:
87804824-87804731
94
GLHA_HUMAN
-
0
0
-
-
2.2
ENST00000369582
2
ENSE00000798150
chr6:
87797925-87797831
95
GLHA_HUMAN
1-30
30
2
A:3-6
D:6-6
4
1
2.3
ENST00000369582
3
ENSE00000798149
chr6:
87796152-87795968
185
GLHA_HUMAN
30-91
62
2
A:6-67
D:6-67
62
62
2.4
ENST00000369582
4
ENSE00000798148
chr6:
87795551-87795216
336
GLHA_HUMAN
92-116
25
2
A:68-92
D:68-92
25
25
[
close EXON info
]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1xwdc1 (C:18-259)
1b: SCOP_d1xwdf_ (F:)
2a: SCOP_d1xwdb1 (B:3-107)
2b: SCOP_d1xwde_ (E:)
3a: SCOP_d1xwda_ (A:)
3b: SCOP_d1xwdd_ (D:)
View:
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)
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Ngr ectodomain-like
(21)
Protein domain
:
Follicle-stimulating hormone receptor
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1xwdc1
C:18-259
1b
d1xwdf_
F:
Class
:
Small proteins
(3458)
Fold
:
Cystine-knot cytokines
(124)
Superfamily
:
Cystine-knot cytokines
(124)
Family
:
Gonadodropin/Follitropin
(16)
Protein domain
:
Follicle stimulating hormone, follitropin, beta chain
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1xwdb1
B:3-107
2b
d1xwde_
E:
Protein domain
:
Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha)
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
3a
d1xwda_
A:
3b
d1xwdd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1xwdB00 (B:3-107)
1b: CATH_1xwdE00 (E:3-107)
1c: CATH_1xwdA00 (A:3-92)
1d: CATH_1xwdD00 (D:6-92)
View:
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)
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cystine Knot Cytokines, subunit B
(102)
Homologous Superfamily
:
Cystine-knot cytokines
(102)
Human (Homo sapiens)
(84)
1a
1xwdB00
B:3-107
1b
1xwdE00
E:3-107
1c
1xwdA00
A:3-92
1d
1xwdD00
D:6-92
[
close CATH info
]
Pfam Domains
(4, 10)
Info
all PFAM domains
1a: PFAM_Cys_knot_1xwdE01 (E:3-104)
1b: PFAM_Cys_knot_1xwdE02 (E:3-104)
2a: PFAM_Hormone_6_1xwdD01 (D:6-92)
2b: PFAM_Hormone_6_1xwdD02 (D:6-92)
3a: PFAM_LRR_8_1xwdF01 (F:193-246)
3b: PFAM_LRR_8_1xwdF02 (F:193-246)
3c: PFAM_LRR_8_1xwdF03 (F:193-246)
3d: PFAM_LRR_8_1xwdF04 (F:193-246)
4a: PFAM_LRRNT_1xwdF05 (F:18-45)
4b: PFAM_LRRNT_1xwdF06 (F:18-45)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Cystine-knot
(56)
Family
:
Cys_knot
(1)
Homo sapiens (Human)
(1)
1a
Cys_knot-1xwdE01
E:3-104
1b
Cys_knot-1xwdE02
E:3-104
Family
:
Hormone_6
(2)
Homo sapiens (Human)
(2)
2a
Hormone_6-1xwdD01
D:6-92
2b
Hormone_6-1xwdD02
D:6-92
Clan
:
LRR
(77)
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
3a
LRR_8-1xwdF01
F:193-246
3b
LRR_8-1xwdF02
F:193-246
3c
LRR_8-1xwdF03
F:193-246
3d
LRR_8-1xwdF04
F:193-246
Clan
:
no clan defined [family: LRRNT]
(22)
Family
:
LRRNT
(22)
Homo sapiens (Human)
(15)
4a
LRRNT-1xwdF05
F:18-45
4b
LRRNT-1xwdF06
F:18-45
[
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Asym.Unit (153 KB)
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